Variant report

Variant	rs369192382
Chromosome Location	chr17:16116862-16116863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr17:16116729-16117050	K562	blood:	n/a	n/a
2	EP300	chr17:16116726-16117088	K562	blood:	n/a	n/a
3	TAL1	chr17:16116682-16117068	K562	blood:	n/a	chr17:16116848-16116866
4	ZNF384	chr17:16116640-16117145	K562	blood:	n/a	n/a
5	PML	chr17:16116714-16117023	K562	blood:	n/a	n/a
6	CEBPD	chr17:16116717-16117112	K562	blood:	n/a	n/a
7	TEAD4	chr17:16116723-16117124	K562	blood:	n/a	n/a
8	RCOR1	chr17:16116656-16117145	K562	blood:	n/a	n/a
9	TBL1XR1	chr17:16116723-16117082	K562	blood:	n/a	n/a
10	CEBPB	chr17:16116614-16116943	K562	blood:	n/a	n/a
11	CEBPB	chr17:16116642-16117019	K562	blood:	n/a	n/a
12	JUND	chr17:16116821-16117049	K562	blood:	n/a	n/a
13	GATA2	chr17:16116705-16117013	K562	blood:	n/a	chr17:16116848-16116865
14	CTCF	chr17:16116860-16117010	NB4	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16116365..16119285-chr17:16395133..16397532,2	K562	blood:
2	chr17:16115684..16120775-chr17:16282002..16285784,4	MCF-7	breast:
3	chr17:16115419..16117298-chr17:56706385..56708749,2	MCF-7	breast:

No data

Variant related genes	Relation type
PIGL	TF binding region
ENSG00000181350	Chromatin interaction
ENSG00000170315	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv522169	chr17:15923709-16147821	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv907713	chr17:15981874-16127206	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
8	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
9	nsv907718	chr17:16080849-16143709	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv528263	chr17:16097430-16196996	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
11	nsv112235	chr17:16116824-16120100	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16088000-16117000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr17:16093600-16117000	Weak transcription	Aorta	Aorta
3	chr17:16095200-16117000	Weak transcription	Right Ventricle	heart
4	chr17:16101800-16117000	Weak transcription	Fetal Stomach	stomach
5	chr17:16104000-16117000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr17:16105200-16117000	Weak transcription	NHEK	skin
7	chr17:16105400-16118000	Weak transcription	Spleen	Spleen
8	chr17:16106400-16117000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:16106800-16118000	Weak transcription	Lung	lung
10	chr17:16107000-16117000	Weak transcription	Brain Anterior Caudate	brain
11	chr17:16107000-16117000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr17:16108400-16117600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:16108800-16117600	Weak transcription	Gastric	stomach
14	chr17:16110000-16117000	Weak transcription	Stomach Mucosa	stomach
15	chr17:16112200-16117600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr17:16114000-16117400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr17:16114000-16117600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:16114400-16117000	Weak transcription	Fetal Heart	heart
19	chr17:16114400-16117200	Enhancers	Small Intestine	intestine
20	chr17:16114600-16117000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr17:16114600-16117000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:16114800-16117200	Enhancers	Fetal Brain Female	brain
23	chr17:16114800-16117400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr17:16114800-16119400	Active TSS	GM12878-XiMat	blood
25	chr17:16115000-16117000	Weak transcription	NHDF-Ad	bronchial
26	chr17:16115000-16117400	Enhancers	Fetal Brain Male	brain
27	chr17:16115200-16117000	Weak transcription	Brain Hippocampus Middle	brain
28	chr17:16115200-16117600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:16115400-16117000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr17:16115400-16117000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr17:16115400-16117600	Enhancers	Primary B cells from peripheral blood	blood
32	chr17:16115800-16117400	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr17:16116000-16117000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr17:16116000-16117200	Enhancers	Thymus	Thymus
35	chr17:16116000-16117600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr17:16116000-16117800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr17:16116200-16117000	Enhancers	Primary B cells from cord blood	blood
38	chr17:16116200-16117000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr17:16116200-16117000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:16116200-16117000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr17:16116200-16117000	Weak transcription	Fetal Muscle Leg	muscle
42	chr17:16116200-16117000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr17:16116200-16117400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr17:16116200-16117400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr17:16116200-16117400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr17:16116200-16117400	Enhancers	Brain Germinal Matrix	brain
47	chr17:16116200-16117400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr17:16116200-16117400	Weak transcription	Fetal Thymus	thymus
49	chr17:16116200-16117600	Enhancers	Colon Smooth Muscle	Colon
50	chr17:16116200-16119400	Active TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links