Variant report

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv33415	chr11:17532596-17549436	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2074302	chr11:17532886-17532887	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17516800-17553000	Weak transcription	Stomach Mucosa	stomach
2	chr11:17525400-17533600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:17526200-17539400	Weak transcription	Pancreas	Pancrea
4	chr11:17526600-17536600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:17526600-17537200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:17527600-17549200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr11:17528800-17544000	Weak transcription	Gastric	stomach
8	chr11:17529800-17548600	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr11:17530200-17533200	Weak transcription	Left Ventricle	heart
10	chr11:17530600-17533200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:17530600-17536600	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:17530800-17533000	Weak transcription	Psoas Muscle	Psoas
13	chr11:17530800-17539800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:17531200-17536000	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr11:17531600-17547200	Strong transcription	Fetal Intestine Large	intestine
16	chr11:17531800-17552400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:17532200-17533200	Weak transcription	Colonic Mucosa	Colon
18	chr11:17532200-17547200	Strong transcription	Fetal Intestine Small	intestine
19	chr11:17532800-17533600	Enhancers	Spleen	Spleen
20	chr11:17532800-17534600	Strong transcription	Sigmoid Colon	Sigmoid Colon

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