Variant report

Variant	rs369237702
Chromosome Location	chr11:34360702-34360703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr11:34360681-34361494	A549	lung:	n/a	n/a
2	SP1	chr11:34360606-34361500	A549	lung:	n/a	chr11:34360894-34360904
3	EP300	chr11:34360619-34361380	A549	lung:	n/a	n/a
4	JUND	chr11:34360684-34361139	A549	lung:	n/a	n/a
5	MBD4	chr11:34360684-34361305	HepG2	liver:	n/a	n/a
6	FOXA1	chr11:34360696-34361227	HepG2	liver:	n/a	chr11:34360969-34360981
7	SPI1	chr11:34360656-34361377	HL-60	blood:	n/a	chr11:34360856-34360869 chr11:34361145-34361158
8	BCL3	chr11:34360618-34361152	A549	lung:	n/a	n/a
9	CEBPB	chr11:34360601-34361582	A549	lung:	n/a	chr11:34361370-34361383
10	MAX	chr11:34360593-34361784	A549	lung:	n/a	n/a
11	TEAD4	chr11:34360651-34361501	HepG2	liver:	n/a	n/a
12	MYBL2	chr11:34360649-34361307	HepG2	liver:	n/a	n/a
13	JUND	chr11:34360684-34361168	A549	lung:	n/a	n/a
14	FOXA2	chr11:34360670-34361238	A549	lung:	n/a	chr11:34360969-34360981
15	NFIC	chr11:34360689-34361366	HepG2	liver:	n/a	n/a
16	POLR2A	chr11:34360641-34361167	HL-60	blood:	n/a	n/a
17	POLR2A	chr11:34360656-34361277	HL-60	blood:	n/a	n/a
18	FOXA2	chr11:34360701-34361613	A549	lung:	n/a	chr11:34360969-34360981
19	REST	chr11:34360677-34361806	A549	lung:	n/a	n/a
20	GATA3	chr11:34360701-34361436	A549	lung:	n/a	chr11:34361148-34361159 chr11:34360965-34360974
21	BCL3	chr11:34360702-34361332	A549	lung:	n/a	n/a
22	MAX	chr11:34360622-34361594	A549	lung:	n/a	n/a
23	MYBL2	chr11:34360616-34361317	HepG2	liver:	n/a	n/a
24	EP300	chr11:34360538-34361637	A549	lung:	n/a	n/a
25	EP300	chr11:34360662-34361348	HepG2	liver:	n/a	n/a
26	TCF12	chr11:34360443-34361784	A549	lung:	n/a	n/a
27	SP1	chr11:34360608-34361427	A549	lung:	n/a	chr11:34360894-34360904

No.	Distal block	Cell Line	Cell type
1	chr11:34360672..34363341-chr11:34364599..34366363,2	MCF-7	breast:
2	chr11:34065587..34067431-chr11:34358883..34361873,2	K562	blood:
3	chr11:34357216..34358836-chr11:34360327..34362099,2	K562	blood:
4	chr11:34283475..34285529-chr11:34358260..34360841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254708	TF binding region
ENSG00000254708	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
8	nsv508622	chr11:34350559-34363184	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv1845235	chr11:34357429-34363950	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3411338	chr11:34360548-34362657	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34351800-34363800	Weak transcription	Left Ventricle	heart
2	chr11:34352600-34363800	Weak transcription	Gastric	stomach
3	chr11:34353200-34360800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:34353200-34365400	Weak transcription	Pancreas	Pancrea
5	chr11:34353400-34362800	Weak transcription	Right Atrium	heart
6	chr11:34353800-34360800	Weak transcription	HSMMtube	muscle
7	chr11:34354000-34360800	Weak transcription	HSMM	muscle
8	chr11:34354400-34360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:34354400-34362200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:34354400-34363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:34354400-34366600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:34354600-34362600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:34354600-34363000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:34354600-34363800	Weak transcription	NH-A	brain
15	chr11:34354800-34363000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:34356200-34361800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:34356400-34360800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:34358000-34361000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:34358200-34362000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:34359000-34361000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:34359000-34362400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:34359400-34360800	Weak transcription	Thymus	Thymus
23	chr11:34359400-34364400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:34359600-34362400	Enhancers	Primary B cells from cord blood	blood
25	chr11:34359600-34362400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:34360000-34362200	Weak transcription	Fetal Thymus	thymus
27	chr11:34360000-34362400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:34360200-34368400	Enhancers	Liver	Liver
29	chr11:34360400-34361200	Enhancers	Primary T cells from cord blood	blood
30	chr11:34360400-34361400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:34360400-34361400	Weak transcription	Psoas Muscle	Psoas
32	chr11:34360400-34361600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:34360400-34361600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr11:34360400-34361800	Enhancers	GM12878-XiMat	blood
35	chr11:34360600-34360800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr11:34360600-34361000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:34360600-34361400	Flanking Active TSS	HepG2	liver
38	chr11:34360600-34361600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:34360600-34362000	Enhancers	Primary hematopoietic stem cells	blood
40	chr11:34360600-34362000	Enhancers	Lung	lung
41	chr11:34360600-34362000	Flanking Active TSS	A549	lung

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