Variant report

Variant	rs369386
Chromosome Location	chr7:151005033-151005034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs219248	0.83[MEX][hapmap]
rs2530461	0.91[ASN][1000 genomes]
rs367656	0.96[CEU][hapmap];0.88[CHB][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs369410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs386432	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs442033	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs450471	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs369386	NUB1	cis	cerebellum	SCAN
rs369386	ZNF746	cis	parietal	SCAN
rs369386	ZNF398	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151001000-151005400	Weak transcription	Spleen	Spleen
2	chr7:151001000-151008200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:151001200-151006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:151002200-151008400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:151002600-151010600	Weak transcription	Right Atrium	heart
6	chr7:151005000-151006800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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