Variant report

Variant	rs369402695
Chromosome Location	chr3:52589763-52589764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52589679-52589825	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52588842..52591237-chr3:52592421..52595221,3	K562	blood:

Variant related genes	Relation type
RNU6-856P	TF binding region
RNU6ATAC16P	TF binding region
ENSG00000221518	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv8459	chr3:52589746-52589924	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52571400-52594200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:52572400-52594200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:52572400-52633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:52573200-52590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:52573400-52595000	Weak transcription	Stomach Mucosa	stomach
6	chr3:52573600-52598400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:52574400-52623800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:52574600-52594200	Weak transcription	K562	blood
9	chr3:52574600-52598800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:52574800-52605000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:52576000-52590400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:52576800-52625600	Strong transcription	Fetal Thymus	thymus
13	chr3:52577000-52599000	Strong transcription	Fetal Muscle Leg	muscle
14	chr3:52577200-52599000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:52577600-52595400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:52577600-52598600	Strong transcription	Placenta	Placenta
17	chr3:52577600-52605200	Strong transcription	Dnd41	blood
18	chr3:52578000-52595400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:52578200-52591200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:52578200-52625600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:52578400-52598600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:52578400-52600600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:52578800-52598200	Strong transcription	Primary B cells from cord blood	blood
24	chr3:52578800-52598800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr3:52578800-52599600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:52578800-52601400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:52579000-52598600	Strong transcription	Thymus	Thymus
28	chr3:52579000-52599200	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr3:52579200-52598200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:52580400-52590000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:52580400-52598400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr3:52580600-52590800	Strong transcription	Fetal Intestine Large	intestine
33	chr3:52580600-52598400	Strong transcription	Primary T cells from cord blood	blood
34	chr3:52580600-52598600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:52580800-52589800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:52580800-52598800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr3:52581000-52594600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:52581000-52598400	Strong transcription	HUVEC	blood vessel
39	chr3:52581000-52601000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:52581400-52590200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:52582000-52590000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:52582400-52591800	Weak transcription	A549	lung
43	chr3:52582400-52592000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr3:52582600-52596200	Strong transcription	GM12878-XiMat	blood
45	chr3:52583200-52590400	Strong transcription	Adipose Nuclei	Adipose
46	chr3:52583200-52594400	Strong transcription	Lung	lung
47	chr3:52583200-52600400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:52583200-52600800	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr3:52584200-52589800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:52584200-52598600	Strong transcription	Fetal Lung	lung

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