Variant report

Variant	rs369432216
Chromosome Location	chr6:119252570-119252571
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119216722..119218492-chr6:119251658..119253168,2	K562	blood:
2	chr6:119213694..119219544-chr6:119251621..119258172,21	K562	blood:
3	chr6:119251278..119254603-chr6:119254723..119256647,5	MCF-7	breast:
4	chr6:119235730..119238725-chr6:119250576..119253329,2	K562	blood:
5	chr6:119225449..119227305-chr6:119252060..119254076,2	K562	blood:
6	chr6:119242613..119249110-chr6:119251513..119257145,6	MCF-7	breast:
7	chr6:119250858..119252631-chr6:119254027..119256960,4	MCF-7	breast:
8	chr6:119230403..119232175-chr6:119251881..119254660,2	K562	blood:
9	chr6:119230305..119231903-chr6:119251881..119253560,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction
ENSG00000111875	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16596	chr6:119251007-119272087	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv437523	chr6:119251971-119260280	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119219200-119254000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:119219200-119254400	Strong transcription	Placenta	Placenta
3	chr6:119219600-119253000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:119219600-119253800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:119221200-119255800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:119222000-119254000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:119222000-119254400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:119222000-119255200	Weak transcription	Fetal Heart	heart
9	chr6:119222200-119253400	Strong transcription	Fetal Intestine Large	intestine
10	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:119224000-119254000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:119224200-119252800	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:119224600-119254000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:119224800-119254800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:119226000-119255200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:119227000-119254800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:119227400-119253800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:119227800-119254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:119228000-119253000	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:119228200-119253400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:119235600-119255200	Weak transcription	Fetal Brain Male	brain
23	chr6:119235600-119255400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:119236000-119253400	Strong transcription	Liver	Liver
25	chr6:119236600-119254000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:119236600-119255200	Weak transcription	Right Ventricle	heart
27	chr6:119237000-119255200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:119237000-119255200	Weak transcription	Gastric	stomach
29	chr6:119237200-119255200	Weak transcription	Brain Angular Gyrus	brain
30	chr6:119239600-119253800	Strong transcription	Primary B cells from cord blood	blood
31	chr6:119239800-119255200	Weak transcription	NHLF	lung
32	chr6:119240000-119255200	Weak transcription	Fetal Brain Female	brain
33	chr6:119240400-119252800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:119241000-119254800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:119242600-119255200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:119242600-119255200	Weak transcription	Colonic Mucosa	Colon
37	chr6:119242800-119252600	Weak transcription	NHDF-Ad	bronchial
38	chr6:119242800-119255800	Weak transcription	Spleen	Spleen
39	chr6:119243000-119255200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:119243400-119253600	Weak transcription	Stomach Mucosa	stomach
41	chr6:119243400-119255200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:119243600-119254000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:119243800-119254800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:119243800-119254800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:119244000-119255200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:119244000-119255400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:119244600-119255200	Weak transcription	Aorta	Aorta
48	chr6:119244800-119254800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:119245200-119254800	Weak transcription	Brain Substantia Nigra	brain
50	chr6:119245200-119255000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links