Variant report

Variant	rs369455469
Chromosome Location	chr2:74229921-74229922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74227509..74230131-chr2:74424857..74427331,4	MCF-7	breast:
2	chr2:74153966..74155499-chr2:74229025..74232283,3	K562	blood:
3	chr2:74054453..74058790-chr2:74226313..74230079,4	MCF-7	breast:
4	chr2:74229598..74231793-chr2:74423826..74425705,2	MCF-7	breast:
5	chr2:74153007..74155466-chr2:74228011..74231907,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TET3-3	chr2:74229333-74230678	ucscGeneNc_uc002ske_2

Variant related genes	Relation type
ENSG00000114956	Chromatin interaction
ENSG00000065911	Chromatin interaction
ENSG00000124356	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv818048	chr2:74225434-74313080	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3436825	chr2:74228469-74231017	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3394982	chr2:74229169-74232017	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74224000-74230000	Enhancers	Fetal Brain Male	brain
2	chr2:74226200-74232400	Weak transcription	Hela-S3	cervix
3	chr2:74228800-74231000	Weak transcription	Small Intestine	intestine
4	chr2:74228800-74231200	Active TSS	Psoas Muscle	Psoas
5	chr2:74229200-74230000	Active TSS	Primary T cells from cord blood	blood
6	chr2:74229200-74230000	Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr2:74229200-74230000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:74229200-74230200	Enhancers	Fetal Heart	heart
9	chr2:74229200-74230400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:74229200-74230400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr2:74229200-74230600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr2:74229200-74230600	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr2:74229200-74230800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr2:74229200-74231000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr2:74229200-74231000	Active TSS	Brain Cingulate Gyrus	brain
16	chr2:74229200-74231000	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr2:74229400-74230000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:74229400-74230000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:74229400-74230000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:74229400-74230000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:74229400-74230000	Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr2:74229400-74230000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr2:74229400-74230000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:74229400-74230000	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr2:74229400-74230000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:74229400-74230000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr2:74229400-74230000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr2:74229400-74230000	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr2:74229400-74230000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:74229400-74230000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:74229400-74230000	Active TSS	Muscle Satellite Cultured Cells	--
32	chr2:74229400-74230000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr2:74229400-74230000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:74229400-74230000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:74229400-74230000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:74229400-74230000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr2:74229400-74230000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:74229400-74230000	Active TSS	Adipose Nuclei	Adipose
39	chr2:74229400-74230000	Active TSS	Brain Germinal Matrix	brain
40	chr2:74229400-74230000	Active TSS	Duodenum Mucosa	Duodenum
41	chr2:74229400-74230000	Active TSS	Esophagus	oesophagus
42	chr2:74229400-74230000	Weak transcription	Fetal Kidney	kidney
43	chr2:74229400-74230000	Active TSS	Placenta	Placenta
44	chr2:74229400-74230000	Active TSS	Fetal Stomach	stomach
45	chr2:74229400-74230000	Active TSS	Lung	lung
46	chr2:74229400-74230000	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr2:74229400-74230000	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr2:74229400-74230000	Active TSS	Rectal Smooth Muscle	rectum
49	chr2:74229400-74230000	Active TSS	Right Ventricle	heart
50	chr2:74229400-74230000	Active TSS	Skeletal Muscle Female	skeletal muscle

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