Variant report

Variant	rs369471665
Chromosome Location	chr6:150286307-150286308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150285227..150287207-chr6:150324215..150327395,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2217053	chr6:150286121-150286576	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3527048	chr6:150286138-150286508	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3527049	chr6:150286146-150286526	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3475081	chr6:150286182-150286486	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3475082	chr6:150286182-150286486	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3527050	chr6:150286228-150286433	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3378080	chr6:150286275-150286476	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150284000-150286600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150284200-150286400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
3	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
4	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
5	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
6	chr6:150284200-150286800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:150284200-150286800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:150284200-150286800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:150284200-150287000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr6:150284400-150286400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
12	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
13	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
14	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
15	chr6:150284400-150286600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
17	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
18	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
20	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
23	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Placenta	Placenta
24	chr6:150284400-150286600	Bivalent/Poised TSS	Psoas Muscle	Psoas
25	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
26	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr6:150284600-150286600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
31	chr6:150284600-150286600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:150284600-150286600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:150284600-150286600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
34	chr6:150284600-150286800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:150284600-150286800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr6:150284600-150286800	Active TSS	HSMMtube	muscle
37	chr6:150284800-150286400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
39	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
42	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
43	chr6:150284800-150286600	Bivalent/Poised TSS	Left Ventricle	heart
44	chr6:150284800-150286800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
45	chr6:150284800-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
46	chr6:150285000-150286400	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:150285000-150286400	Flanking Active TSS	Lung	lung
48	chr6:150285000-150286600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:150285000-150286600	Flanking Bivalent TSS/Enh	HMEC	breast
50	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived

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