Variant report

Variant	rs369508011
Chromosome Location	chr12:123317843-123317844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123317720..123322313-chr12:123372173..123377754,7	MCF-7	breast:
2	chr12:123317692..123320507-chr12:123463597..123466562,3	MCF-7	breast:
3	chr12:123311180..123313487-chr12:123316149..123318304,2	K562	blood:
4	chr12:123303995..123306395-chr12:123315559..123318480,2	MCF-7	breast:
5	chr12:123278169..123279892-chr12:123315469..123318246,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139722	Chromatin interaction
ENSG00000182196	Chromatin interaction
ENSG00000150967	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3388790	chr12:123275902-123655103	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv899572	chr12:123292503-123477311	Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv899573	chr12:123312051-123528405	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv517200	chr12:123312051-123654498	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv899574	chr12:123316566-123360151	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123305800-123318800	Weak transcription	Pancreas	Pancrea
2	chr12:123310400-123319200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:123311000-123318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:123311200-123318200	Weak transcription	Fetal Brain Female	brain
5	chr12:123311200-123319000	Weak transcription	Aorta	Aorta
6	chr12:123311400-123318800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:123311600-123318800	Weak transcription	NHDF-Ad	bronchial
8	chr12:123312200-123318800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr12:123312400-123318800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:123312400-123318800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:123312400-123318800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:123312400-123318800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:123312400-123318800	Weak transcription	Brain Substantia Nigra	brain
14	chr12:123312600-123318800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr12:123313800-123319200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:123315600-123319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:123315800-123318800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr12:123315800-123318800	Weak transcription	A549	lung
19	chr12:123315800-123318800	Weak transcription	K562	blood
20	chr12:123315800-123318800	Weak transcription	NHLF	lung
21	chr12:123316000-123318800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:123316000-123318800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:123316000-123318800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr12:123316000-123318800	Weak transcription	Placenta	Placenta
25	chr12:123316000-123318800	Weak transcription	NHEK	skin
26	chr12:123316200-123318000	Weak transcription	Hela-S3	cervix
27	chr12:123316200-123318800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:123316200-123318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:123316200-123318800	Weak transcription	HMEC	breast
30	chr12:123316400-123319200	Weak transcription	Gastric	stomach
31	chr12:123317000-123318000	Weak transcription	Stomach Mucosa	stomach
32	chr12:123317800-123318200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:123317800-123318800	Enhancers	Fetal Brain Male	brain

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