The 2.0 version of rSNPBase

Variant report

Variant rs369561988
Chromosome Location chr5:126189700-126189701
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:126148200-126193200 Weak transcription Brain Angular Gyrus brain
2 chr5:126158000-126204600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:126163800-126193200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr5:126182000-126190800 Weak transcription Monocytes-CD14+_RO01746 blood
5 chr5:126182400-126192600 Weak transcription Colon Smooth Muscle Colon
6 chr5:126182600-126193000 Weak transcription Right Ventricle heart
7 chr5:126183600-126210400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr5:126183800-126193000 Weak transcription Fetal Lung lung
9 chr5:126183800-126193400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr5:126184400-126190800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr5:126184400-126193000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr5:126184400-126193200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr5:126184400-126193600 Weak transcription Brain Germinal Matrix brain
14 chr5:126184600-126193000 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr5:126185400-126190800 Weak transcription Stomach Mucosa stomach
16 chr5:126186800-126189800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
17 chr5:126187400-126189800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
18 chr5:126187400-126189800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
19 chr5:126187600-126192600 Weak transcription Left Ventricle heart
20 chr5:126187800-126190200 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr5:126187800-126192800 Weak transcription Fetal Heart heart
22 chr5:126188000-126189800 Weak transcription H9 Cell Line embryonic stem cell
23 chr5:126188000-126193400 Weak transcription Fetal Kidney kidney
24 chr5:126188200-126190000 Weak transcription H1 Cell Line embryonic stem cell
25 chr5:126188200-126190000 Weak transcription Spleen Spleen
26 chr5:126188200-126193200 Weak transcription Brain Anterior Caudate brain
27 chr5:126188200-126193600 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr5:126188200-126200800 Weak transcription NHDF-Ad bronchial
29 chr5:126188200-126203400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr5:126188400-126190000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr5:126188400-126190800 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr5:126188400-126190800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr5:126188400-126190800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr5:126188400-126193000 Weak transcription Osteobl bone
35 chr5:126188400-126193200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr5:126188600-126189800 Transcr. at gene 5' and 3' Thymus Thymus
37 chr5:126188600-126193200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr5:126188600-126193200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr5:126188600-126204400 Weak transcription NH-A brain
40 chr5:126188800-126189800 Flanking Active TSS Primary T cells fromperipheralblood blood
41 chr5:126188800-126189800 Flanking Active TSS Primary T helper cells fromperipheralblood blood
42 chr5:126188800-126190600 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr5:126188800-126191800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr5:126188800-126192600 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr5:126188800-126193400 Weak transcription iPS-20b Cell Line embryonic stem cell
46 chr5:126188800-126204600 Weak transcription NHLF lung
47 chr5:126189000-126189800 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
48 chr5:126189000-126190800 Weak transcription HUVEC blood vessel
49 chr5:126189000-126192600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr5:126189000-126192600 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015