Variant report

Variant	rs369692481
Chromosome Location	chr1:172015197-172015198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172014842..172016444-chr1:172016914..172019213,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	nsv3532	chr1:171997451-172042351	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3374464	chr1:172014139-172023467	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171994000-172020400	Weak transcription	Left Ventricle	heart
2	chr1:172001400-172019000	Weak transcription	Fetal Brain Male	brain
3	chr1:172005600-172015200	Weak transcription	HSMMtube	muscle
4	chr1:172006400-172025600	Weak transcription	Adipose Nuclei	Adipose
5	chr1:172009200-172022800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:172010000-172022200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:172010400-172022000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:172010600-172022400	Weak transcription	HMEC	breast
9	chr1:172010600-172051400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:172010800-172019800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:172010800-172022400	Weak transcription	NHEK	skin
12	chr1:172010800-172037600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:172011000-172019600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:172011400-172037800	Weak transcription	Ovary	ovary
15	chr1:172012600-172022600	Weak transcription	Fetal Lung	lung
16	chr1:172012800-172015200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:172013000-172022400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172013400-172015200	Strong transcription	Brain Cingulate Gyrus	brain
19	chr1:172013800-172015200	Strong transcription	Brain Angular Gyrus	brain
20	chr1:172013800-172015200	Strong transcription	Brain Hippocampus Middle	brain
21	chr1:172013800-172015200	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr1:172014000-172023800	Weak transcription	Primary T cells from cord blood	blood
23	chr1:172014200-172015200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:172014200-172015400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr1:172014200-172015800	Weak transcription	Brain Substantia Nigra	brain
26	chr1:172014200-172024200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:172014600-172024400	Weak transcription	Brain Germinal Matrix	brain
28	chr1:172014800-172015200	ZNF genes & repeats	Aorta	Aorta
29	chr1:172014800-172015200	ZNF genes & repeats	Brain Anterior Caudate	brain
30	chr1:172015000-172019000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr1:172015000-172024200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:172015000-172033200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:172015000-172042600	Weak transcription	Fetal Brain Female	brain

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