Variant report

Variant	rs369744426
Chromosome Location	chr8:95445937-95445938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95426007..95427555-chr8:95444022..95446517,2	MCF-7	breast:
2	chr8:95434502..95438276-chr8:95441146..95446197,5	K562	blood:
3	chr8:95437761..95439579-chr8:95445352..95447331,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1031480	chr8:95375696-95447407	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3446413	chr8:95444376-95448274	Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
6	nsv611749	chr8:95445505-95447407	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891202	chr8:95445660-95456986	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95393200-95447000	Weak transcription	K562	blood
2	chr8:95412200-95447200	Weak transcription	Fetal Thymus	thymus
3	chr8:95429600-95446200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:95430400-95447200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:95430600-95446400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:95430600-95447000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:95430600-95447400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:95430800-95446400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:95431000-95446800	Weak transcription	HMEC	breast
10	chr8:95431000-95447400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:95431000-95447400	Weak transcription	HSMM	muscle
12	chr8:95431000-95447400	Weak transcription	NHDF-Ad	bronchial
13	chr8:95431000-95448600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:95431000-95448600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:95432400-95478600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:95433600-95446400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr8:95433800-95447200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:95434000-95447400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:95438200-95447600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:95441400-95446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:95441400-95446400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:95441400-95446400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:95441800-95446400	Weak transcription	Brain Germinal Matrix	brain
24	chr8:95441800-95448600	Weak transcription	Hela-S3	cervix
25	chr8:95442000-95447600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:95442200-95447200	Weak transcription	Right Ventricle	heart
27	chr8:95442200-95447200	Weak transcription	HUVEC	blood vessel
28	chr8:95442400-95447200	Weak transcription	Fetal Kidney	kidney
29	chr8:95442600-95465400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr8:95443200-95446000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:95443200-95446400	Weak transcription	Fetal Lung	lung
32	chr8:95443200-95447200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:95443200-95447200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:95443400-95446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:95443600-95446400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:95443600-95446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:95443800-95446400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:95444000-95447200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr8:95444000-95447200	Weak transcription	NH-A	brain
40	chr8:95444000-95447400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:95444000-95447400	Weak transcription	NHEK	skin
42	chr8:95444000-95448800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:95444200-95446600	Weak transcription	Brain Anterior Caudate	brain
44	chr8:95444400-95447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:95444600-95447200	Weak transcription	Adipose Nuclei	Adipose
46	chr8:95444600-95447200	Weak transcription	Ovary	ovary
47	chr8:95444800-95449600	Active TSS	GM12878-XiMat	blood
48	chr8:95445000-95446200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:95445000-95446600	Weak transcription	Primary T cells from cord blood	blood
50	chr8:95445000-95447200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links