Variant report

Variant	rs369757256
Chromosome Location	chr5:79556371-79556372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv2588767	chr5:79556365-79558159	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79553600-79561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:79553600-79568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:79553800-79556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:79553800-79556400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:79554200-79564800	Weak transcription	Fetal Stomach	stomach
7	chr5:79554400-79559600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:79554400-79561600	Weak transcription	Primary T cells from cord blood	blood
9	chr5:79554400-79563800	Weak transcription	Fetal Thymus	thymus
10	chr5:79554600-79556400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:79554600-79564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:79555600-79556600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:79556000-79556600	Enhancers	HepG2	liver
14	chr5:79556200-79556600	Enhancers	Liver	Liver
15	chr5:79556200-79556600	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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