Variant report

Variant	rs369777089
Chromosome Location	chr17:46506013-46506014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46505363..46507156-chr17:46658355..46659859,2	K562	blood:
2	chr17:46503757..46506567-chr17:46674757..46677231,2	K562	blood:

Variant related genes	Relation type
ENSG00000257178	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv2761960	chr17:46504489-46529846	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46503200-46507000	Enhancers	Primary hematopoietic stem cells	blood
2	chr17:46503400-46506400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:46503600-46506600	Enhancers	Primary B cells from peripheral blood	blood
4	chr17:46503600-46506600	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr17:46503600-46506600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:46503800-46506400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46503800-46507600	Active TSS	Primary T cells fromperipheralblood	blood
8	chr17:46505000-46506600	Active TSS	GM12878-XiMat	blood
9	chr17:46505000-46507200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr17:46505000-46507600	Active TSS	Thymus	Thymus
11	chr17:46505000-46508000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr17:46505200-46506200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr17:46505200-46506400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46505200-46506600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:46505400-46506400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr17:46505400-46506400	Active TSS	Fetal Thymus	thymus
17	chr17:46505400-46507000	Bivalent Enhancer	Fetal Lung	lung
18	chr17:46505400-46507600	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr17:46505400-46507800	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr17:46505600-46506800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr17:46505600-46506800	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr17:46505600-46507400	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr17:46505600-46508200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:46505800-46507800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:46505800-46507800	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr17:46506000-46506400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr17:46506000-46507600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr17:46506000-46507800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr17:46506000-46510200	Weak transcription	K562	blood

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