Variant report

Variant	rs369802972
Chromosome Location	chr15:83081517-83081518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr15:83081432-83081520	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
UBE2Q2P3	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv428802	chr15:82879650-83107710	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv833069	chr15:82936700-83159994	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv904447	chr15:82952273-83099227	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv904448	chr15:82952273-83146206	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv3501526	chr15:82953997-83163195	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv3501527	chr15:82953997-83163195	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
14	esv3511106	chr15:82954147-83150695	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
15	esv3511107	chr15:82954147-83150695	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv3312434	chr15:82954397-83162595	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv3312435	chr15:82954397-83162595	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
18	esv1823691	chr15:82957249-83126316	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
19	esv3485636	chr15:82957847-83162945	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
20	esv3485637	chr15:82957847-83162945	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
21	nsv482552	chr15:82970501-83140071	Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
22	esv3521494	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
23	esv3521495	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
24	esv1850985	chr15:83056155-83091723	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
25	esv1851340	chr15:83057158-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
26	esv1795394	chr15:83059259-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
27	esv1808361	chr15:83059259-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
28	esv1820976	chr15:83059259-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
29	esv1826512	chr15:83059259-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
30	esv1844221	chr15:83060069-83094461	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
31	esv1797167	chr15:83060123-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
32	esv1812510	chr15:83060123-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
33	esv1830129	chr15:83060123-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
34	esv1847895	chr15:83060123-83097713	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv428645	chr15:83069951-83227151	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
36	esv1819490	chr15:83072045-83089642	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
37	nsv984102	chr15:83073184-83201789	Enhancers	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
38	nsv904449	chr15:83074069-83098161	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
39	esv1796185	chr15:83074652-83112591	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
40	esv1825668	chr15:83078088-83095129	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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