Variant report

Variant	rs369867084
Chromosome Location	chr6:37137514-37137515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:37137420-37137570	GM06990	blood:	n/a	n/a
2	POLR2A	chr6:37136826-37137555	Gliobla	brain:	n/a	n/a
3	RUNX3	chr6:37136634-37138394	GM12878	blood:	n/a	n/a
4	GTF2F1	chr6:37137269-37137561	H1-hESC	embryonic stem cell:	n/a	n/a
5	TBP	chr6:37137350-37137559	GM12878	blood:	n/a	n/a
6	MYC	chr6:37137486-37137517	K562	blood:	n/a	n/a
7	MXI1	chr6:37136696-37140545	IMR90	lung:	n/a	n/a
8	HNF4A	chr6:37137260-37137682	HepG2	liver:	n/a	n/a
9	MTA3	chr6:37136526-37137622	GM12878	blood:	n/a	n/a
10	TAF1	chr6:37136756-37138824	K562	blood:	n/a	n/a
11	EP300	chr6:37137363-37137725	SK-N-SH_RA	brain:	n/a	n/a
12	MAZ	chr6:37136662-37140555	K562	blood:	n/a	chr6:37136825-37136834 chr6:37140193-37140202 chr6:37137163-37137172 chr6:37140188-37140203 chr6:37140191-37140202 chr6:37140190-37140203 chr6:37136748-37136758 chr6:37140190-37140205 chr6:37140192-37140201 chr6:37140190-37140203 chr6:37140192-37140201 chr6:37140192-37140202 chr6:37140191-37140201 chr6:37140190-37140203 chr6:37138443-37138453
13	CREB1	chr6:37137096-37137892	H1-hESC	embryonic stem cell:	n/a	n/a
14	YY1	chr6:37136922-37139598	HepG2	liver:	n/a	chr6:37138413-37138433 chr6:37138470-37138479 chr6:37137964-37137975 chr6:37137579-37137589
15	FOXA1	chr6:37137234-37137713	HepG2	liver:	n/a	n/a
16	ZNF263	chr6:37136798-37137689	HEK293-T-REx	kidney:	n/a	chr6:37137520-37137529
17	ZBTB33	chr6:37137441-37137688	HepG2	liver:	n/a	n/a
18	CHD2	chr6:37136886-37137874	GM12878	blood:	n/a	chr6:37137563-37137573 chr6:37137591-37137598
19	POLR2A	chr6:37136735-37138426	GM19099	blood:	n/a	n/a
20	FOXM1	chr6:37137029-37137966	ECC-1	luminal epithelium:	n/a	n/a
21	MYBL2	chr6:37136616-37137894	HepG2	liver:	n/a	n/a
22	POLR2A	chr6:37136579-37146396	PBDE	blood:	n/a	n/a
23	POLR2A	chr6:37136637-37145170	Hela-S3	cervix:	n/a	n/a
24	MAX	chr6:37136965-37138038	A549	lung:	n/a	chr6:37137163-37137172
25	BRCA1	chr6:37137369-37137744	Hela-S3	cervix:	n/a	n/a
26	RAD21	chr6:37136841-37137652	H1-hESC	embryonic stem cell:	n/a	chr6:37137226-37137236 chr6:37137605-37137619 chr6:37137452-37137465
27	MXI1	chr6:37136407-37140568	SK-N-SH	brain:	n/a	n/a
28	POLR2A	chr6:37136776-37146030	K562	blood:	n/a	n/a
29	POLR2A	chr6:37137208-37137525	SK-N-SH	brain:	n/a	n/a
30	EGR1	chr6:37137467-37137925	GM12878	blood:	n/a	chr6:37137718-37137732 chr6:37137655-37137669
31	UBTF	chr6:37136830-37142621	K562	blood:	n/a	n/a
32	HCFC1	chr6:37136833-37138658	K562	blood:	n/a	n/a
33	TAF1	chr6:37137070-37139010	K562	blood:	n/a	n/a
34	POLR2A	chr6:37137156-37139077	K562	blood:	n/a	n/a
35	POLR2A	chr6:37135827-37146353	K562	blood:	n/a	n/a
36	JUND	chr6:37136797-37138427	K562	blood:	n/a	chr6:37137161-37137172 chr6:37137284-37137292 chr6:37137287-37137299 chr6:37137549-37137558
37	HNF4G	chr6:37137245-37137959	HepG2	liver:	n/a	n/a
38	EP300	chr6:37137218-37138071	H1-hESC	embryonic stem cell:	n/a	n/a
39	YY1	chr6:37137206-37137659	H1-hESC	embryonic stem cell:	n/a	chr6:37137579-37137589
40	POLR2A	chr6:37136787-37138485	GM18505	blood:	n/a	n/a
41	EP300	chr6:37137126-37138473	ECC-1	luminal epithelium:	n/a	n/a
42	RAD21	chr6:37136893-37137563	Hela-S3	cervix:	n/a	chr6:37137226-37137236 chr6:37137452-37137465
43	CREB1	chr6:37137363-37137774	ECC-1	luminal epithelium:	n/a	n/a
44	TAF7	chr6:37136702-37137654	H1-hESC	embryonic stem cell:	n/a	n/a
45	CEBPB	chr6:37137207-37137605	HepG2	liver:	n/a	n/a
46	SP1	chr6:37137290-37138086	GM12878	blood:	n/a	chr6:37137571-37137585 chr6:37137547-37137561 chr6:37137570-37137581 chr6:37137572-37137581 chr6:37137513-37137527 chr6:37137571-37137581 chr6:37137546-37137557 chr6:37137507-37137516 chr6:37137570-37137582 chr6:37137571-37137580 chr6:37137570-37137582 chr6:37137506-37137518
47	E2F4	chr6:37137387-37137718	GM12878	blood:	n/a	chr6:37137584-37137601 chr6:37137586-37137595 chr6:37137587-37137598 chr6:37137600-37137612 chr6:37137583-37137597 chr6:37137591-37137598 chr6:37137587-37137594 chr6:37137599-37137610 chr6:37137586-37137594 chr6:37137584-37137601 chr6:37137491-37137500 chr6:37137587-37137598 chr6:37137584-37137601 chr6:37137587-37137598 chr6:37137587-37137598
48	POLR2A	chr6:37136678-37139481	Raji	blood:	n/a	n/a
49	RCOR1	chr6:37137406-37137558	GM12878	blood:	n/a	n/a
50	CHD2	chr6:37136922-37138059	HepG2	liver:	n/a	chr6:37137563-37137573 chr6:37137940-37137950 chr6:37137591-37137598

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:37137464-37137514	HepG2	liver:	n/a
2	chr6:37137464-37137514	CMK	blood:	n/a
3	chr6:37137464-37137514	HCM	heart:	n/a
4	chr6:37137464-37137514	HIPEpiC	eye:	n/a
5	chr6:37137464-37137514	GM12891	blood:	n/a
6	chr6:37137464-37137514	HUVEC	blood vessel:	n/a
7	chr6:37137464-37137514	BJ	skin:	n/a
8	chr6:37137464-37137514	PrEC	prostate:	n/a
9	chr6:37137464-37137514	PANC-1	pancreas:	n/a
10	chr6:37137464-37137514	ovcar-3	ovarian:	n/a
11	chr6:37137464-37137514	GM06990	blood:	n/a
12	chr6:37137464-37137514	RPTEC	kidney:	n/a
13	chr6:37137464-37137514	Hela-S3	cervix:	n/a
14	chr6:37137464-37137514	MCF10A-Er-Src	breast:	n/a
15	chr6:37137464-37137514	Caco-2	colon:	n/a
16	chr6:37137464-37137514	ECC-1	luminal epithelium:	n/a
17	chr6:37137464-37137514	MCF-7	breast:	n/a
18	chr6:37137464-37137514	HRPEpiC	eye:	n/a
19	chr6:37137464-37137514	HCT-116	colon:	n/a
20	chr6:37137464-37137514	HEK293	kidney:	embryo
21	chr6:37137464-37137514	HRCEpiC	kidney:	n/a
22	chr6:37137464-37137514	HCPEpiC	choroid plexus:	n/a
23	chr6:37137464-37137514	AG10803	skin:	n/a
24	chr6:37137464-37137514	K562	blood:	n/a
25	chr6:37137464-37137514	Jurkat	blood:	n/a
26	chr6:37137464-37137514	H1-hESC	embryonic stem cell:	embryo
27	chr6:37137464-37137514	SAEC	small airway:	n/a
28	chr6:37137464-37137514	U87	brain:	n/a
29	chr6:37137464-37137514	SK-N-SH_RA	brain:	n/a
30	chr6:37137464-37137514	PFSK-1	brain:	n/a
31	chr6:37137464-37137514	HL-60	blood:	n/a
32	chr6:37137464-37137514	IMR90	lung:	fetal
33	chr6:37137464-37137514	AG09309	skin:	n/a
34	chr6:37137464-37137514	Hepatocyte	liver:	n/a
35	chr6:37137464-37137514	HNPCEpiC	eye:	n/a
36	chr6:37137464-37137514	HRE	kidney:	n/a
37	chr6:37137464-37137514	SK-N-SH	brain:	n/a
38	chr6:37137464-37137514	HCF	heart:	n/a
39	chr6:37137464-37137514	A549	lung:	n/a
40	chr6:37137464-37137514	GM12878	blood:	n/a
41	chr6:37137464-37137514	NHDF-neo	bronchial:	n/a
42	chr6:37137464-37137514	HEEpiC	esophagus:	n/a
43	chr6:37137464-37137514	T-47D	breast:	n/a
44	chr6:37137464-37137514	GM19239	blood:	n/a
45	chr6:37137464-37137514	HPAEpiC	pulmonary alveolar:	n/a
46	chr6:37137464-37137514	NH-A	brain:	n/a
47	chr6:37137464-37137514	HMEC	breast:	n/a
48	chr6:37137464-37137514	LNCaP	prostate:	n/a
49	chr6:37137464-37137514	SKMC	muscle:	n/a
50	chr6:37137464-37137514	NB4	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:110166877..110167627-chr6:37137088..37137655,2	Hela-S3	cervix:
2	chr6:37137326..37137946-chr7:128049282..128050254,2	Hela-S3	cervix:
3	chr11:62609122..62609646-chr6:37137134..37137644,2	Hela-S3	cervix:
4	chr15:65596619..65597760-chr6:37136409..37137556,3	Hela-S3	cervix:
5	chr6:37058109..37060738-chr6:37135509..37137809,2	MCF-7	breast:
6	chr6:26026812..26027344-chr6:37137111..37137790,2	Hela-S3	cervix:
7	chr6:36989173..36991551-chr6:37137394..37139647,3	K562	blood:
8	chr6:37121872..37123647-chr6:37135726..37137977,2	MCF-7	breast:

Variant related genes	Relation type
PIM1	TF binding region
PIM1	CpG island
ENSG00000216412	Chromatin interaction
ENSG00000137710	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000106348	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334326	chr6:37136424-37139122	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	esv3423280	chr6:37136599-37139147	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37136000-37139800	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr6:37136400-37139000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:37136600-37137600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:37136600-37138200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:37136600-37138400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:37136600-37140200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:37136600-37140200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:37136600-37140200	Active TSS	Aorta	Aorta
9	chr6:37136600-37140600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:37136800-37137600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:37136800-37138000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:37136800-37138000	Active TSS	Brain Germinal Matrix	brain
13	chr6:37136800-37138200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:37136800-37138200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:37136800-37139000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:37136800-37139000	Active TSS	Right Ventricle	heart
17	chr6:37136800-37139000	Active TSS	A549	lung
18	chr6:37136800-37139800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:37136800-37139800	Active TSS	Gastric	stomach
20	chr6:37136800-37140200	Active TSS	H1 Cell Line	embryonic stem cell
21	chr6:37136800-37140200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:37136800-37140200	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:37136800-37140200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:37136800-37140200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:37136800-37140200	Active TSS	Esophagus	oesophagus
26	chr6:37136800-37140200	Active TSS	Left Ventricle	heart
27	chr6:37136800-37140200	Active TSS	Lung	lung
28	chr6:37136800-37140400	Active TSS	Psoas Muscle	Psoas
29	chr6:37136800-37140800	Active TSS	Ovary	ovary
30	chr6:37137000-37138200	Transcr. at gene 5' and 3'	Right Atrium	heart
31	chr6:37137000-37138200	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr6:37137000-37138400	Active TSS	Stomach Smooth Muscle	stomach
33	chr6:37137000-37138600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:37137000-37138800	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr6:37137000-37138800	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr6:37137000-37138800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:37137000-37138800	Active TSS	Brain Hippocampus Middle	brain
38	chr6:37137000-37138800	Active TSS	Fetal Stomach	stomach
39	chr6:37137000-37138800	Active TSS	NHLF	lung
40	chr6:37137000-37138800	Active TSS	Osteobl	bone
41	chr6:37137000-37139000	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr6:37137000-37139000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:37137000-37139000	Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr6:37137000-37139000	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:37137000-37139600	Active TSS	Brain Angular Gyrus	brain
46	chr6:37137000-37139800	Active TSS	Brain Cingulate Gyrus	brain
47	chr6:37137000-37140200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:37137000-37140200	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr6:37137000-37140200	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr6:37137000-37140200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links