Variant report

Variant	rs369884368
Chromosome Location	chr6:5286706-5286707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:5285714..5287859-chr6:5301778..5303462,2	K562	blood:
2	chr6:5284244..5290564-chr6:5292142..5296092,7	K562	blood:
3	chr6:5280760..5282906-chr6:5284734..5288197,3	K562	blood:
4	chr6:5261565..5263835-chr6:5284540..5287301,3	MCF-7	breast:
5	chr6:5279637..5281330-chr6:5284508..5287117,2	K562	blood:
6	chr6:5285977..5287695-chr6:5316657..5318764,2	MCF-7	breast:
7	chr6:5285992..5290262-chr6:5291687..5294091,5	K562	blood:
8	chr6:5260357..5262137-chr6:5285896..5288338,2	MCF-7	breast:
9	chr6:5269061..5270683-chr6:5285353..5286881,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000214113	Chromatin interaction
ENSG00000145982	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1034681	chr6:5070351-5387176	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv538113	chr6:5070351-5387176	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1018152	chr6:5077025-5387176	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv600873	chr6:5089278-5400658	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1030254	chr6:5132261-5431585	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1034463	chr6:5137959-5345678	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1021646	chr6:5157795-5367254	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv538115	chr6:5157795-5367254	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1029609	chr6:5187633-5397254	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1035080	chr6:5206533-5396019	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv538116	chr6:5206533-5396019	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1016456	chr6:5216835-5315913	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv538117	chr6:5216835-5315913	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv1028185	chr6:5247624-5340163	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv830578	chr6:5264086-5455570	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1022911	chr6:5286297-5322133	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv538119	chr6:5286297-5322133	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5262400-5287200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:5262400-5302400	Weak transcription	Aorta	Aorta
3	chr6:5262600-5287200	Weak transcription	Esophagus	oesophagus
4	chr6:5262600-5287600	Weak transcription	Ovary	ovary
5	chr6:5262800-5287200	Weak transcription	Spleen	Spleen
6	chr6:5262800-5287400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:5263000-5287200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:5263000-5287400	Weak transcription	Fetal Stomach	stomach
9	chr6:5263000-5287800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:5263000-5301000	Weak transcription	Fetal Brain Male	brain
11	chr6:5263200-5287800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:5263400-5287400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:5263400-5287600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:5263800-5291800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:5267000-5290400	Weak transcription	HepG2	liver
16	chr6:5268000-5294400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:5274600-5287200	Weak transcription	Left Ventricle	heart
18	chr6:5274800-5287800	Weak transcription	NHEK	skin
19	chr6:5275000-5290400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:5275200-5287400	Weak transcription	Psoas Muscle	Psoas
21	chr6:5276600-5287400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:5276600-5294000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:5277400-5287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:5278600-5287200	Weak transcription	Right Ventricle	heart
25	chr6:5279200-5287400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:5279200-5289800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:5279400-5288200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:5279400-5298200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:5280400-5294000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:5280600-5287200	Weak transcription	HMEC	breast
31	chr6:5280600-5289800	Weak transcription	Primary B cells from cord blood	blood
32	chr6:5280800-5289400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:5280800-5293200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:5280800-5308200	Weak transcription	Primary T cells from cord blood	blood
35	chr6:5281000-5294400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:5281400-5287600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:5281400-5293400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:5282600-5287400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:5282600-5287800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:5282600-5292200	Weak transcription	Fetal Heart	heart
41	chr6:5282800-5287400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:5282800-5287400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:5282800-5287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:5284400-5287400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:5284800-5287400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:5285200-5287200	Weak transcription	Lung	lung
47	chr6:5285400-5294600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:5285600-5287200	Weak transcription	Gastric	stomach
49	chr6:5286000-5287400	Weak transcription	Pancreas	Pancrea
50	chr6:5286000-5288600	Enhancers	GM12878-XiMat	blood

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