Variant report

Variant	rs370099452
Chromosome Location	chrX:77811101-77811102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrX:77810930-77811223	K562	blood:	n/a	chrX:77811073-77811094
2	CTCF	chrX:77810980-77811130	HMF	breast:	n/a	chrX:77811073-77811094
3	CTCF	chrX:77810953-77811209	Pancreas_OC	pancreas:	n/a	chrX:77811073-77811094
4	ZNF143	chrX:77810920-77811233	GM12878	blood:	n/a	n/a
5	CTCF	chrX:77811060-77811210	HAc	cerebellar:	n/a	chrX:77811073-77811094
6	CTCF	chrX:77810980-77811130	HPF	lung:	n/a	chrX:77811073-77811094
7	CTCF	chrX:77810978-77811108	ProgFib	skin:	n/a	chrX:77811073-77811094
8	CTCF	chrX:77810960-77811110	HBMEC	blood vessel:	n/a	chrX:77811073-77811094
9	CTCF	chrX:77810705-77811423	A549	lung:	n/a	chrX:77811073-77811094
10	CTCF	chrX:77810993-77811135	GM13976	blood:	n/a	chrX:77811073-77811094
11	SMC3	chrX:77810731-77811414	SK-N-SH	brain:	n/a	n/a
12	CTCF	chrX:77810980-77811130	GM12864	blood:	n/a	chrX:77811073-77811094
13	CTCF	chrX:77810980-77811130	HUVEC	blood vessel:	n/a	chrX:77811073-77811094
14	RFX5	chrX:77810985-77811219	Hela-S3	cervix:	n/a	n/a
15	CTCF	chrX:77810871-77811289	IMR90	lung:	n/a	chrX:77811073-77811094
16	RAD21	chrX:77810888-77811220	GM12878	blood:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
17	CTCF	chrX:77810965-77811129	Gliobla	brain:	n/a	chrX:77811073-77811094
18	CTCF	chrX:77810982-77811146	GM10248	blood:	n/a	chrX:77811073-77811094
19	CTCF	chrX:77811020-77811170	AG10803	skin:	n/a	chrX:77811073-77811094
20	CTCF	chrX:77810981-77811106	MCF-7	breast:	n/a	chrX:77811073-77811094
21	CTCF	chrX:77810980-77811130	HMEC	breast:	n/a	chrX:77811073-77811094
22	CTCF	chrX:77811000-77811150	AG04450	lung:	n/a	chrX:77811073-77811094
23	CTCF	chrX:77811015-77811104	HepG2	liver:	n/a	chrX:77811073-77811094
24	CTCF	chrX:77810922-77811201	Spleen_OC	spleen:	n/a	chrX:77811073-77811094
25	CTCF	chrX:77810980-77811130	HCPEpiC	choroid plexus:	n/a	chrX:77811073-77811094
26	RAD21	chrX:77810843-77811352	A549	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
27	RAD21	chrX:77810798-77811389	MCF-7	breast:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
28	CTCF	chrX:77811020-77811170	HCFaa	heart:	n/a	chrX:77811073-77811094
29	CTCF	chrX:77811060-77811210	HVMF	connective:	n/a	chrX:77811073-77811094
30	RAD21	chrX:77810898-77811317	Hela-S3	cervix:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
31	CTCF	chrX:77811020-77811170	HepG2	liver:	n/a	chrX:77811073-77811094
32	CTCF	chrX:77810970-77811165	GM13977	blood:	n/a	chrX:77811073-77811094
33	CTCF	chrX:77811020-77811170	HMF	breast:	n/a	chrX:77811073-77811094
34	CTCF	chrX:77810996-77811178	Lung_OC	lung:	n/a	chrX:77811073-77811094
35	CTCF	chrX:77811000-77811150	HCPEpiC	choroid plexus:	n/a	chrX:77811073-77811094
36	CTCF	chrX:77811000-77811150	BJ	skin:	n/a	chrX:77811073-77811094
37	CTCF	chrX:77810958-77811184	HUVEC	blood vessel:	n/a	chrX:77811073-77811094
38	CTCF	chrX:77810930-77811129	SK-N-SH_RA	brain:	n/a	chrX:77811073-77811094
39	CTCF	chrX:77810960-77811110	GM12870	blood:	n/a	chrX:77811073-77811094
40	CTCF	chrX:77810975-77811173	Hela-S3	cervix:	n/a	chrX:77811073-77811094
41	CTCF	chrX:77811005-77811141	LNCaP	prostate:	n/a	chrX:77811073-77811094
42	RAD21	chrX:77810936-77811267	HepG2	liver:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
43	CTCF	chrX:77811000-77811150	HPAF	blood vessel:	n/a	chrX:77811073-77811094
44	CTCF	chrX:77811000-77811150	SK-N-SH_RA	brain:	n/a	chrX:77811073-77811094
45	RAD21	chrX:77810864-77811316	IMR90	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
46	CTCF	chrX:77811060-77811210	RPTEC	kidney:	n/a	chrX:77811073-77811094
47	CTCF	chrX:77810960-77811110	HPF	lung:	n/a	chrX:77811073-77811094
48	CTCF	chrX:77810980-77811130	Hela-S3	cervix:	n/a	chrX:77811073-77811094
49	RAD21	chrX:77810902-77811342	MCF-7	breast:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
50	CTCF	chrX:77810960-77811110	HL-60	blood:	n/a	chrX:77811073-77811094

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:77810818..77811621-chrX:78337177..78337725,3	MCF-7	breast:
2	chrX:77810661..77811278-chrX:78780189..78780762,2	MCF-7	breast:

Variant related genes	Relation type
UBE2V1P7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv510836	chrX:77796010-77825919	Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3410250	chrX:77803856-77860976	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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