Variant report

Variant	rs370196509
Chromosome Location	chr11:86511809-86511810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45823993..45827958-chr11:86511064..86514676,4	MCF-7	breast:
2	chr11:86510417..86513146-chr20:45982984..45985420,2	MCF-7	breast:
3	chr11:86381425..86386014-chr11:86508895..86515059,6	MCF-7	breast:
4	chr11:86411235..86420303-chr11:86507153..86518645,29	MCF-7	breast:
5	chr11:86379027..86389838-chr11:86504553..86514376,29	MCF-7	breast:
6	chr11:86440758..86442314-chr11:86511622..86514014,2	MCF-7	breast:
7	chr11:86414005..86419352-chr11:86508550..86514510,10	MCF-7	breast:
8	chr11:45823710..45826999-chr11:86510358..86513611,4	MCF-7	breast:
9	chr11:86208558..86211731-chr11:86511256..86513544,4	MCF-7	breast:
10	chr11:86192819..86194557-chr11:86511589..86513342,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151376	Chromatin interaction
ENSG00000181830	Chromatin interaction
ENSG00000254731	Chromatin interaction
ENSG00000101040	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv523704	chr11:86508928-86528437	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3370524	chr11:86510129-86512677	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3415782	chr11:86510654-86512652	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86510400-86512200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr11:86510600-86512000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr11:86510600-86512000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:86510600-86512200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:86510800-86512000	Active TSS	Brain Angular Gyrus	brain
6	chr11:86510800-86512000	Active TSS	Brain Cingulate Gyrus	brain
7	chr11:86510800-86512400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:86510800-86512400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr11:86510800-86512600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:86510800-86512600	Active TSS	NHLF	lung
11	chr11:86510800-86513600	Active TSS	Fetal Brain Female	brain
12	chr11:86511000-86512000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr11:86511000-86512000	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr11:86511000-86512000	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:86511000-86512000	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr11:86511000-86512000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:86511000-86512000	Active TSS	Brain Substantia Nigra	brain
18	chr11:86511000-86512200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:86511000-86512200	Active TSS	Esophagus	oesophagus
20	chr11:86511000-86512400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:86511000-86512400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr11:86511000-86512600	Bivalent/Poised TSS	Thymus	Thymus
23	chr11:86511000-86512800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr11:86511000-86513200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:86511000-86513400	Active TSS	Aorta	Aorta
26	chr11:86511000-86513400	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr11:86511000-86513800	Active TSS	Ovary	ovary
28	chr11:86511000-86514000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:86511000-86514000	Active TSS	Fetal Kidney	kidney
30	chr11:86511000-86514800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:86511200-86512000	Active TSS	Brain Hippocampus Middle	brain
32	chr11:86511200-86512000	Active TSS	Duodenum Mucosa	Duodenum
33	chr11:86511200-86512000	Active TSS	Fetal Intestine Large	intestine
34	chr11:86511200-86512000	Bivalent/Poised TSS	HepG2	liver
35	chr11:86511200-86512000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
36	chr11:86511200-86512000	Active TSS	Osteobl	bone
37	chr11:86511200-86512200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr11:86511200-86512200	Active TSS	Fetal Lung	lung
39	chr11:86511200-86512200	Active TSS	Gastric	stomach
40	chr11:86511200-86512400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:86511200-86512400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:86511200-86512400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:86511200-86512600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:86511200-86512600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:86511200-86512600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:86511200-86512600	Flanking Active TSS	Liver	Liver
47	chr11:86511200-86512600	Active TSS	Pancreas	Pancrea
48	chr11:86511200-86512600	Active TSS	Psoas Muscle	Psoas
49	chr11:86511200-86512800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:86511200-86512800	Active TSS	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links