Variant report

Variant	rs370198219
Chromosome Location	chr6:5787921-5787922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970669	chr6:5783028-5791204	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv981101	chr6:5787642-5788880	Enhancers Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5781600-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:5782200-5788200	Enhancers	Fetal Thymus	thymus
3	chr6:5783800-5794600	Weak transcription	Psoas Muscle	Psoas
4	chr6:5786600-5788000	Enhancers	Primary T cells from cord blood	blood
5	chr6:5786800-5788000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:5786800-5788000	Enhancers	Dnd41	blood
7	chr6:5787000-5788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:5787000-5788000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:5787000-5788000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:5787000-5789200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:5787200-5788000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:5787200-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:5787400-5788000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:5787400-5793000	Weak transcription	Fetal Brain Female	brain
15	chr6:5787800-5791600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:5787800-5803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links