Variant report

Variant	rs370217857
Chromosome Location	chrX:77811144-77811145
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrX:77810930-77811223	K562	blood:	n/a	chrX:77811073-77811094
2	CTCF	chrX:77810953-77811209	Pancreas_OC	pancreas:	n/a	chrX:77811073-77811094
3	ZNF143	chrX:77810920-77811233	GM12878	blood:	n/a	n/a
4	CTCF	chrX:77811060-77811210	HAc	cerebellar:	n/a	chrX:77811073-77811094
5	CTCF	chrX:77810705-77811423	A549	lung:	n/a	chrX:77811073-77811094
6	SMC3	chrX:77810731-77811414	SK-N-SH	brain:	n/a	n/a
7	RFX5	chrX:77810985-77811219	Hela-S3	cervix:	n/a	n/a
8	CTCF	chrX:77810871-77811289	IMR90	lung:	n/a	chrX:77811073-77811094
9	RAD21	chrX:77810888-77811220	GM12878	blood:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
10	CTCF	chrX:77810982-77811146	GM10248	blood:	n/a	chrX:77811073-77811094
11	CTCF	chrX:77811020-77811170	AG10803	skin:	n/a	chrX:77811073-77811094
12	CTCF	chrX:77811000-77811150	AG04450	lung:	n/a	chrX:77811073-77811094
13	CTCF	chrX:77810922-77811201	Spleen_OC	spleen:	n/a	chrX:77811073-77811094
14	RAD21	chrX:77810843-77811352	A549	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
15	RAD21	chrX:77810798-77811389	MCF-7	breast:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
16	CTCF	chrX:77811020-77811170	HCFaa	heart:	n/a	chrX:77811073-77811094
17	CTCF	chrX:77811060-77811210	HVMF	connective:	n/a	chrX:77811073-77811094
18	RAD21	chrX:77810898-77811317	Hela-S3	cervix:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
19	CTCF	chrX:77811020-77811170	HepG2	liver:	n/a	chrX:77811073-77811094
20	CTCF	chrX:77810970-77811165	GM13977	blood:	n/a	chrX:77811073-77811094
21	CTCF	chrX:77811020-77811170	HMF	breast:	n/a	chrX:77811073-77811094
22	CTCF	chrX:77810996-77811178	Lung_OC	lung:	n/a	chrX:77811073-77811094
23	CTCF	chrX:77811000-77811150	HCPEpiC	choroid plexus:	n/a	chrX:77811073-77811094
24	CTCF	chrX:77811000-77811150	BJ	skin:	n/a	chrX:77811073-77811094
25	CTCF	chrX:77810958-77811184	HUVEC	blood vessel:	n/a	chrX:77811073-77811094
26	CTCF	chrX:77810975-77811173	Hela-S3	cervix:	n/a	chrX:77811073-77811094
27	RAD21	chrX:77810936-77811267	HepG2	liver:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
28	CTCF	chrX:77811000-77811150	HPAF	blood vessel:	n/a	chrX:77811073-77811094
29	CTCF	chrX:77811000-77811150	SK-N-SH_RA	brain:	n/a	chrX:77811073-77811094
30	RAD21	chrX:77810864-77811316	IMR90	lung:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
31	CTCF	chrX:77811060-77811210	RPTEC	kidney:	n/a	chrX:77811073-77811094
32	RAD21	chrX:77810902-77811342	MCF-7	breast:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
33	CTCF	chrX:77811020-77811170	NHEK	skin:	n/a	chrX:77811073-77811094
34	RAD21	chrX:77810843-77811255	HepG2	liver:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
35	CTCF	chrX:77810969-77811173	LNCaP	prostate:	n/a	chrX:77811073-77811094
36	RAD21	chrX:77810930-77811203	H1-hESC	embryonic stem cell:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
37	CTCF	chrX:77811040-77811190	HA-sp	spinal cord:	n/a	chrX:77811073-77811094
38	BCLAF1	chrX:77810950-77811256	GM12878	blood:	n/a	n/a
39	RUNX3	chrX:77810850-77811222	GM12878	blood:	n/a	n/a
40	CTCF	chrX:77811020-77811170	GM12864	blood:	n/a	chrX:77811073-77811094
41	CTCF	chrX:77811020-77811170	BJ	skin:	n/a	chrX:77811073-77811094
42	CTCF	chrX:77811020-77811170	GM12865	blood:	n/a	chrX:77811073-77811094
43	RAD21	chrX:77810867-77811243	SK-N-SH_RA	brain:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
44	CTCF	chrX:77810854-77811401	GM12878	blood:	n/a	chrX:77811073-77811094
45	RAD21	chrX:77810886-77811144	SK-N-SH_RA	brain:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
46	CTCF	chrX:77810968-77811170	GM12878	blood:	n/a	chrX:77811073-77811094
47	CTCF	chrX:77811040-77811190	HFF	foreskin:	n/a	chrX:77811073-77811094
48	CTCF	chrX:77810960-77811195	Medullo	brain:	n/a	chrX:77811073-77811094
49	RAD21	chrX:77810877-77811266	GM12878	blood:	n/a	chrX:77811076-77811085 chrX:77811072-77811091
50	CTCF	chrX:77810624-77811402	SK-N-SH	brain:	n/a	chrX:77811073-77811094

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:77810818..77811621-chrX:78337177..78337725,3	MCF-7	breast:
2	chrX:77810661..77811278-chrX:78780189..78780762,2	MCF-7	breast:

Variant related genes	Relation type
UBE2V1P7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv510836	chrX:77796010-77825919	Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3410250	chrX:77803856-77860976	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links