Variant report

Variant	rs370279579
Chromosome Location	chr6:44239059-44239060
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:44238535-44239067	ECC-1	luminal epithelium:	n/a	chr6:44238836-44238849
2	REST	chr6:44238542-44239174	HL-60	blood:	n/a	chr6:44238836-44238849
3	REST	chr6:44238549-44239073	PANC-1	pancreas:	n/a	chr6:44238836-44238849
4	REST	chr6:44237315-44239608	H1-neurons	neurons:	n/a	chr6:44238836-44238849 chr6:44238124-44238137 chr6:44238436-44238446 chr6:44237917-44237927
5	POLR2A	chr6:44237786-44239191	H1-neurons	neurons:	n/a	n/a
6	REST	chr6:44238590-44239101	HL-60	blood:	n/a	chr6:44238836-44238849
7	REST	chr6:44238591-44239096	PFSK-1	brain:	n/a	chr6:44238836-44238849
8	ZBTB7A	chr6:44238596-44239089	ECC-1	luminal epithelium:	n/a	chr6:44238629-44238636
9	REST	chr6:44238539-44239108	MCF-7	breast:	n/a	chr6:44238836-44238849
10	REST	chr6:44238598-44239252	PFSK-1	brain:	n/a	chr6:44238836-44238849
11	REST	chr6:44238421-44239157	PFSK-1	brain:	n/a	chr6:44238836-44238849 chr6:44238436-44238446
12	MAZ	chr6:44238298-44239163	IMR90	lung:	n/a	chr6:44238381-44238391 chr6:44239104-44239114
13	REST	chr6:44238647-44239071	A549	lung:	n/a	chr6:44238836-44238849
14	POLR2A	chr6:44237840-44239211	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44231911..44234847-chr6:44237510..44240187,2	MCF-7	breast:
2	chr6:44237771..44241790-chr6:44264717..44266725,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272442	TF binding region
ENSG00000146232	Chromatin interaction
ENSG00000146221	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv885851	chr6:44178471-44240559	Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv603003	chr6:44191920-44253765	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
4	nsv462936	chr6:44191920-44282316	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
5	nsv603004	chr6:44191920-44282316	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
6	nsv885853	chr6:44197181-44274797	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv524398	chr6:44200953-44253765	Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv885854	chr6:44211867-44274797	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv462937	chr6:44211867-44279111	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
10	nsv603005	chr6:44211867-44279111	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
11	nsv885857	chr6:44223010-44250165	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
12	esv3358306	chr6:44236999-44239947	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv3508275	chr6:44237449-44239997	Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	esv3508276	chr6:44237449-44239997	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	esv3395844	chr6:44237774-44239722	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44237000-44239200	Bivalent Enhancer	HUVEC	blood vessel
2	chr6:44237800-44239200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:44237800-44239200	Active TSS	Brain Angular Gyrus	brain
4	chr6:44238000-44239200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:44238000-44239200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:44238000-44239200	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr6:44238000-44239200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:44238000-44239200	Active TSS	Brain Anterior Caudate	brain
9	chr6:44238000-44239400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:44238000-44240800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:44238200-44239400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:44238400-44239200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:44238400-44239400	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:44238400-44239600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
15	chr6:44238400-44239800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
16	chr6:44238600-44239400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr6:44238800-44239200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
18	chr6:44238800-44239200	Bivalent Enhancer	Primary B cells from cord blood	blood
19	chr6:44238800-44239200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
20	chr6:44238800-44239200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:44238800-44239200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:44238800-44239200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr6:44238800-44239200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:44238800-44239200	Active TSS	Brain Cingulate Gyrus	brain
25	chr6:44238800-44239200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
26	chr6:44238800-44239200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr6:44238800-44239200	Bivalent Enhancer	Placenta	Placenta
28	chr6:44238800-44239200	Bivalent Enhancer	Fetal Thymus	thymus
29	chr6:44238800-44239200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
30	chr6:44238800-44239400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:44238800-44239400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:44238800-44239400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
33	chr6:44238800-44239400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr6:44238800-44239400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:44238800-44239400	Bivalent Enhancer	Liver	Liver
36	chr6:44238800-44239600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr6:44238800-44239600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:44238800-44239600	Flanking Active TSS	Fetal Brain Male	brain
39	chr6:44238800-44239800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
40	chr6:44238800-44239800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
41	chr6:44238800-44241200	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr6:44239000-44239200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:44239000-44239200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:44239000-44239200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr6:44239000-44239200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:44239000-44239200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:44239000-44239200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
48	chr6:44239000-44239200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:44239000-44239200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:44239000-44239200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

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