Variant report

Variant	rs370370016
Chromosome Location	chr11:5829651-5829652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:5621238..5622269-chr11:5829297..5830332,4	MCF-7	breast:
2	chr11:5829421..5830302-chr11:5912492..5913020,2	MCF-7	breast:
3	chr11:5497451..5498014-chr11:5829478..5830015,2	MCF-7	breast:
4	chr11:5823269..5825988-chr11:5829238..5831177,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv553273	chr11:5639873-5871831	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	nsv553277	chr11:5722948-6010075	Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	esv1843296	chr11:5730377-5970717	Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	esv2758255	chr11:5730377-5970717	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	esv2759801	chr11:5730377-6007613	ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	nsv832058	chr11:5747594-5926814	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
13	nsv896951	chr11:5773981-5832191	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv2757421	chr11:5776623-5842356	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	esv1837262	chr11:5808353-5830288	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3410809	chr11:5829438-5829684	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5828800-5829800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr11:5828800-5829800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:5828800-5829800	Enhancers	Placenta	Placenta
4	chr11:5828800-5832200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:5829200-5829800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:5829200-5829800	Enhancers	Right Ventricle	heart
7	chr11:5829400-5829800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:5829400-5829800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:5829400-5830200	Active TSS	Primary hematopoietic stem cells	blood
10	chr11:5829600-5829800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:5829600-5829800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:5829600-5829800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:5829600-5829800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:5829600-5829800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:5829600-5829800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr11:5829600-5829800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:5829600-5829800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr11:5829600-5829800	Enhancers	Primary B cells from peripheral blood	blood
19	chr11:5829600-5829800	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
20	chr11:5829600-5829800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr11:5829600-5829800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:5829600-5829800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:5829600-5829800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
24	chr11:5829600-5829800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:5829600-5829800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr11:5829600-5829800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:5829600-5829800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:5829600-5829800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:5829600-5829800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:5829600-5829800	Enhancers	Adipose Nuclei	Adipose
31	chr11:5829600-5829800	Enhancers	Liver	Liver
32	chr11:5829600-5829800	Bivalent Enhancer	Brain Angular Gyrus	brain
33	chr11:5829600-5829800	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr11:5829600-5829800	Enhancers	Brain Germinal Matrix	brain
35	chr11:5829600-5829800	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr11:5829600-5829800	Bivalent Enhancer	Brain Substantia Nigra	brain
37	chr11:5829600-5829800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr11:5829600-5829800	Enhancers	Fetal Heart	heart
39	chr11:5829600-5829800	Bivalent Enhancer	Fetal Intestine Large	intestine
40	chr11:5829600-5829800	Bivalent Enhancer	Fetal Intestine Small	intestine
41	chr11:5829600-5829800	Enhancers	Fetal Lung	lung
42	chr11:5829600-5829800	Enhancers	Fetal Muscle Leg	muscle
43	chr11:5829600-5829800	Bivalent Enhancer	Fetal Stomach	stomach
44	chr11:5829600-5829800	Enhancers	Fetal Thymus	thymus
45	chr11:5829600-5829800	Enhancers	Ovary	ovary
46	chr11:5829600-5829800	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr11:5829600-5829800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
48	chr11:5829600-5829800	Enhancers	Stomach Mucosa	stomach
49	chr11:5829600-5829800	Bivalent Enhancer	A549	lung
50	chr11:5829600-5829800	Enhancers	GM12878-XiMat	blood

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