Variant report

Variant	rs370390106
Chromosome Location	chrX:153714562-153714563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:81)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:81 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chrX:153714214-153714618	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chrX:153714447-153714971	PBDE	blood:	n/a	n/a
3	E2F1	chrX:153714260-153715379	Hela-S3	cervix:	n/a	chrX:153714462-153714473 chrX:153715365-153715374 chrX:153715335-153715345
4	MXI1	chrX:153714266-153714578	GM12878	blood:	n/a	n/a
5	TFAP2C	chrX:153714157-153715516	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chrX:153714321-153715577	HUVEC	blood vessel:	n/a	n/a
7	HA-E2F1	chrX:153714133-153715605	MCF-7	breast:	n/a	chrX:153714462-153714473 chrX:153715365-153715374 chrX:153715335-153715345
8	POLR2A	chrX:153714294-153715415	NB4	blood:	n/a	n/a
9	UBTF	chrX:153713923-153714650	K562	blood:	n/a	n/a
10	MXI1	chrX:153714427-153714573	Hela-S3	cervix:	n/a	n/a
11	ZNF384	chrX:153714547-153714627	K562	blood:	n/a	n/a
12	POLR2A	chrX:153714391-153715374	GM15510	blood:	n/a	n/a
13	POLR2A	chrX:153714414-153715477	GM12878	blood:	n/a	n/a
14	POLR2A	chrX:153714333-153715059	A549	lung:	n/a	n/a
15	MAX	chrX:153714229-153715454	K562	blood:	n/a	chrX:153714814-153714824
16	POLR2A	chrX:153714321-153715028	GM12878	blood:	n/a	n/a
17	E2F6	chrX:153714091-153715066	K562	blood:	n/a	n/a
18	MAX	chrX:153714104-153714596	K562	blood:	n/a	n/a
19	POLR2A	chrX:153714407-153715591	MCF-7	breast:	n/a	n/a
20	E2F6	chrX:153714143-153714597	H1-hESC	embryonic stem cell:	n/a	n/a
21	MXI1	chrX:153714171-153714644	K562	blood:	n/a	n/a
22	MYC	chrX:153714193-153715404	K562	blood:	n/a	chrX:153714814-153714824
23	POLR2A	chrX:153714484-153714643	Gliobla	brain:	n/a	n/a
24	YY1	chrX:153714530-153715388	K562	blood:	n/a	chrX:153715365-153715379 chrX:153715291-153715305
25	MAZ	chrX:153714133-153715535	K562	blood:	n/a	chrX:153714814-153714824
26	MAX	chrX:153714325-153714581	GM12878	blood:	n/a	n/a
27	CCNT2	chrX:153714196-153715464	K562	blood:	n/a	n/a
28	USF1	chrX:153714309-153714604	K562	blood:	n/a	chrX:153714450-153714461
29	POLR2A	chrX:153714284-153715031	GM12878	blood:	n/a	n/a
30	E2F6	chrX:153714182-153715322	K562	blood:	n/a	n/a
31	SMC3	chrX:153714558-153714592	Hela-S3	cervix:	n/a	n/a
32	MYC	chrX:153714224-153715354	NB4	blood:	n/a	chrX:153714814-153714824
33	MYC	chrX:153714355-153714596	K562	blood:	n/a	n/a
34	E2F6	chrX:153714210-153714576	K562	blood:	n/a	n/a
35	MAX	chrX:153714200-153714692	MCF-7	breast:	n/a	n/a
36	MAX	chrX:153714280-153714661	A549	lung:	n/a	n/a
37	MAZ	chrX:153713615-153715759	IMR90	lung:	n/a	chrX:153714814-153714824 chrX:153715603-153715612 chrX:153714026-153714036
38	CBX3	chrX:153714110-153714589	K562	blood:	n/a	n/a
39	POLR2A	chrX:153714162-153715601	MCF-7	breast:	n/a	n/a
40	ELF1	chrX:153714169-153714622	K562	blood:	n/a	n/a
41	TAF1	chrX:153714536-153715062	HepG2	liver:	n/a	n/a
42	HMGN3	chrX:153714195-153715454	K562	blood:	n/a	n/a
43	MAX	chrX:153714099-153715450	A549	lung:	n/a	chrX:153714814-153714824
44	E2F6	chrX:153714024-153714816	A549	lung:	n/a	n/a
45	USF1	chrX:153714326-153714601	SK-N-SH_RA	brain:	n/a	chrX:153714450-153714461
46	HEY1	chrX:153714506-153714945	K562	blood:	n/a	n/a
47	UBTF	chrX:153712832-153715455	K562	blood:	n/a	n/a
48	POLR2A	chrX:153714050-153715008	K562	blood:	n/a	n/a
49	MYC	chrX:153714243-153715306	K562	blood:	n/a	chrX:153714814-153714824
50	USF1	chrX:153714320-153714662	ECC-1	luminal epithelium:	n/a	chrX:153714450-153714461

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:153644453..153647083-chrX:153713946..153716046,3	MCF-7	breast:
2	chrX:153711098..153721097-chrX:153740825..153747830,28	MCF-7	breast:
3	chrX:153711537..153716459-chrX:153767417..153772470,5	K562	blood:
4	chrX:153712862..153716379-chrX:153773449..153776383,5	MCF-7	breast:
5	chrX:153605453..153609525-chrX:153712051..153716179,6	MCF-7	breast:
6	chrX:153605593..153609893-chrX:153711571..153716768,6	K562	blood:
7	chrX:153671368..153673500-chrX:153711760..153714684,2	K562	blood:
8	X:153657611-153671976..X:153701576-153715648	Hela-S3	cervix:
9	chr20:52824614..52827050-chrX:153713627..153715899,2	MCF-7	breast:
10	chrX:153624545..153632466-chrX:153709449..153721332,27	K562	blood:
11	chrX:153713288..153721499-chrX:153767815..153773161,10	MCF-7	breast:
12	chrX:153697571..153703616-chrX:153709529..153715825,8	MCF-7	breast:
13	chrX:153691004..153695395-chrX:153711545..153717567,7	MCF-7	breast:
14	chrX:153624383..153633652-chrX:153704408..153721325,48	MCF-7	breast:
15	chrX:153624542..153632362-chrX:153710560..153721332,23	K562	blood:
16	chrX:153639142..153641724-chrX:153713465..153715375,4	MCF-7	breast:
17	chrX:153711592..153716888-chrX:153760694..153766504,10	MCF-7	breast:
18	chrX:153713355..153716352-chrX:153738180..153740001,2	K562	blood:
19	chrX:153674318..153677222-chrX:153712203..153714813,3	K562	blood:
20	chrX:153713383..153715797-chrX:153769453..153771661,2	K562	blood:
21	chrX:153598007..153604368-chrX:153709391..153720590,15	MCF-7	breast:
22	chrX:153711607..153725784-chrX:153738770..153748754,27	K562	blood:
23	chrX:153635755..153638655-chrX:153711241..153715335,3	K562	blood:
24	chrX:153711367..153718079-chrX:153742298..153748484,13	K562	blood:
25	chrX:153596460..153601893-chrX:153713560..153721410,16	MCF-7	breast:
26	chrX:153576705..153579564-chrX:153713461..153716046,2	MCF-7	breast:
27	chrX:153684734..153690386-chrX:153710045..153718317,11	K562	blood:
28	chrX:153661692..153667668-chrX:153711020..153716574,8	MCF-7	breast:
29	chrX:153669908..153672690-chrX:153713868..153717711,4	MCF-7	breast:
30	chrX:153713080..153721291-chrX:153722442..153727868,15	K562	blood:
31	chrX:153684737..153690252-chrX:153712522..153716734,15	MCF-7	breast:
32	chr16:31190898..31191887-chrX:153714080..153715002,2	Hela-S3	cervix:
33	chrX:153234477..153236480-chrX:153714089..153717072,2	K562	blood:
34	chrX:153601928..153604764-chrX:153713001..153716367,3	MCF-7	breast:
35	chrX:153639079..153641453-chrX:153714284..153716430,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC10A3-1	chrX:153714381-153714672	NONHSAT139189

No data

Variant related genes	Relation type
UBL4A	TF binding region
ENSG00000203879	Chromatin interaction
ENSG00000130827	Chromatin interaction
ENSG00000235802	Chromatin interaction
ENSG00000013563	Chromatin interaction
ENSG00000264783	Chromatin interaction
ENSG00000071553	Chromatin interaction
ENSG00000102119	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000261773	Chromatin interaction
ENSG00000071889	Chromatin interaction
ENSG00000073009	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000160211	Chromatin interaction
ENSG00000071859	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000264484	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000102125	Chromatin interaction
ENSG00000264631	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33199	chrX:152864376-153820241	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
2	nsv528291	chrX:152864376-153827637	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
3	nsv915605	chrX:153333946-153783638	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
4	nsv519042	chrX:153348431-153829693	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
5	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
6	nsv532963	chrX:153576890-153822717	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	195 gene(s)	inside rSNPs	diseases
7	nsv530281	chrX:153622940-153783184	Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
8	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
9	esv3433124	chrX:153714108-153716206	Flanking Active TSS Genic enhancers Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153710200-153719600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chrX:153711400-153718600	ZNF genes & repeats	Fetal Stomach	stomach
3	chrX:153712600-153714600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
4	chrX:153713200-153714800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chrX:153713400-153715200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chrX:153713600-153714600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chrX:153713800-153714600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chrX:153713800-153715400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:153713800-153715400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chrX:153713800-153715600	Active TSS	Psoas Muscle	Psoas
11	chrX:153713800-153715600	Active TSS	HSMM	muscle
12	chrX:153714000-153714600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chrX:153714000-153714600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chrX:153714000-153714600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chrX:153714000-153714600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chrX:153714000-153714800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chrX:153714000-153714800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:153714000-153715200	Active TSS	Brain Hippocampus Middle	brain
19	chrX:153714000-153715200	Active TSS	Right Ventricle	heart
20	chrX:153714000-153715400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chrX:153714000-153715400	Active TSS	Brain Substantia Nigra	brain
22	chrX:153714000-153715400	Active TSS	Left Ventricle	heart
23	chrX:153714000-153715400	Active TSS	NHDF-Ad	bronchial
24	chrX:153714000-153715600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chrX:153714000-153715600	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chrX:153714000-153715600	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chrX:153714000-153715600	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chrX:153714000-153715600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chrX:153714000-153715600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chrX:153714000-153715600	Active TSS	Fetal Brain Female	brain
31	chrX:153714000-153715600	Active TSS	Rectal Smooth Muscle	rectum
32	chrX:153714000-153715800	Weak transcription	Fetal Heart	heart
33	chrX:153714000-153715800	Active TSS	Right Atrium	heart
34	chrX:153714200-153714600	Active TSS	Primary T cells from cord blood	blood
35	chrX:153714200-153714600	Flanking Active TSS	Liver	Liver
36	chrX:153714200-153714800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chrX:153714200-153714800	Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chrX:153714200-153714800	Active TSS	Fetal Kidney	kidney
39	chrX:153714200-153715200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chrX:153714200-153715200	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chrX:153714200-153715200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chrX:153714200-153715200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chrX:153714200-153715200	Active TSS	Colonic Mucosa	Colon
44	chrX:153714200-153715200	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chrX:153714200-153715200	Active TSS	K562	blood
46	chrX:153714200-153715400	Active TSS	H1 Cell Line	embryonic stem cell
47	chrX:153714200-153715400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chrX:153714200-153715400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chrX:153714200-153715400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chrX:153714200-153715400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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