Variant report

Variant	rs370399772
Chromosome Location	chr4:1107102-1107103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr4:1107002-1107592	A549	lung:	n/a	chr4:1107035-1107044 chr4:1107037-1107046 chr4:1107038-1107045
2	E2F6	chr4:1107002-1107816	A549	lung:	n/a	chr4:1107351-1107360 chr4:1107568-1107577 chr4:1107402-1107414
3	NRF1	chr4:1107086-1107639	SK-N-SH	brain:	n/a	chr4:1107375-1107389 chr4:1107568-1107577 chr4:1107347-1107361 chr4:1107352-1107361 chr4:1107350-1107361 chr4:1107378-1107392 chr4:1107350-1107364 chr4:1107570-1107579
4	MAX	chr4:1107011-1107753	A549	lung:	n/a	chr4:1107035-1107044 chr4:1107645-1107655 chr4:1107037-1107046 chr4:1107038-1107045
5	CHD2	chr4:1107089-1107606	H1-hESC	embryonic stem cell:	n/a	n/a
6	GTF2F1	chr4:1107080-1107580	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr4:1107066-1107636	Hela-S3	cervix:	n/a	chr4:1107351-1107360 chr4:1107568-1107577 chr4:1107402-1107414
8	SP4	chr4:1107061-1107457	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr4:1107011-1107767	A549	lung:	n/a	chr4:1107035-1107044 chr4:1107645-1107655 chr4:1107755-1107764 chr4:1107037-1107046 chr4:1107038-1107045
10	MAX	chr4:1107001-1107674	SK-N-SH	brain:	n/a	chr4:1107035-1107044 chr4:1107645-1107655 chr4:1107037-1107046 chr4:1107038-1107045
11	POLR2A	chr4:1107048-1107571	SK-N-MC	brain:	n/a	n/a
12	E2F6	chr4:1106952-1107864	H1-hESC	embryonic stem cell:	n/a	chr4:1107351-1107360 chr4:1107568-1107577 chr4:1107402-1107414
13	MAX	chr4:1107004-1107640	SK-N-SH	brain:	n/a	chr4:1107035-1107044 chr4:1107037-1107046 chr4:1107038-1107045
14	USF1	chr4:1107041-1107337	H1-hESC	embryonic stem cell:	n/a	n/a
15	TCF12	chr4:1107021-1107637	A549	lung:	n/a	n/a
16	MAX	chr4:1106901-1107793	H1-hESC	embryonic stem cell:	n/a	chr4:1107035-1107044 chr4:1107645-1107655 chr4:1107755-1107764 chr4:1107037-1107046 chr4:1107038-1107045
17	E2F6	chr4:1106984-1107740	A549	lung:	n/a	chr4:1107351-1107360 chr4:1107568-1107577 chr4:1107402-1107414
18	MAX	chr4:1107018-1107613	H1-hESC	embryonic stem cell:	n/a	chr4:1107035-1107044 chr4:1107037-1107046 chr4:1107038-1107045
19	MAX	chr4:1106921-1107795	H1-hESC	embryonic stem cell:	n/a	chr4:1107035-1107044 chr4:1107645-1107655 chr4:1107755-1107764 chr4:1107037-1107046 chr4:1107038-1107045
20	GABPA	chr4:1107039-1107672	H1-hESC	embryonic stem cell:	n/a	chr4:1107375-1107389 chr4:1107568-1107577 chr4:1107347-1107361 chr4:1107352-1107361 chr4:1107350-1107361 chr4:1107378-1107392 chr4:1107350-1107364 chr4:1107570-1107579
21	E2F6	chr4:1106885-1107844	H1-hESC	embryonic stem cell:	n/a	chr4:1107351-1107360 chr4:1107568-1107577 chr4:1107402-1107414
22	TCF12	chr4:1107003-1107247	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAX	chr4:1107042-1107619	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:1103766..1108037-chr4:1241801..1244610,3	K562	blood:
2	chr4:1106466..1109450-chr4:1112409..1114063,2	K562	blood:

Variant related genes	Relation type
ENSG00000251652	TF binding region
ENSG00000196810	Chromatin interaction
ENSG00000159692	Chromatin interaction
ENSG00000212458	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1009619	chr4:901897-1215657	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1003876	chr4:927509-1191316	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1000381	chr4:927509-1198766	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1004727	chr4:1015652-1158207	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv536984	chr4:1015652-1158207	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1005990	chr4:1015652-1167619	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1000594	chr4:1045099-1129975	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1001165	chr4:1051512-1129975	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv1012892	chr4:1086871-1176630	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
15	esv3440980	chr4:1105477-1108525	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv3374334	chr4:1105777-1108900	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	esv3406336	chr4:1106152-1107750	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	esv3375020	chr4:1106377-1109125	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1104200-1107200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:1104600-1109600	Weak transcription	Fetal Kidney	kidney
3	chr4:1105600-1107200	Weak transcription	HMEC	breast
4	chr4:1106000-1107200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:1106000-1108400	Active TSS	Hela-S3	cervix
6	chr4:1106200-1108200	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:1106400-1107200	Weak transcription	Brain Anterior Caudate	brain
8	chr4:1106400-1108000	Active TSS	Ovary	ovary
9	chr4:1107000-1107200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr4:1107000-1107200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:1107000-1107200	Enhancers	Esophagus	oesophagus
12	chr4:1107000-1107200	Enhancers	Pancreas	Pancrea
13	chr4:1107000-1107200	Bivalent Enhancer	Spleen	Spleen
14	chr4:1107000-1107400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr4:1107000-1107400	Active TSS	Lung	lung
16	chr4:1107000-1107600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr4:1107000-1107600	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
18	chr4:1107000-1107600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
19	chr4:1107000-1107600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
20	chr4:1107000-1107600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
21	chr4:1107000-1107600	Bivalent/Poised TSS	HSMM	muscle
22	chr4:1107000-1107800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr4:1107000-1107800	Active TSS	Small Intestine	intestine
24	chr4:1107000-1107800	Bivalent/Poised TSS	Thymus	Thymus
25	chr4:1107000-1107800	Active TSS	A549	lung
26	chr4:1107000-1108000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:1107000-1108200	Active TSS	H9 Cell Line	embryonic stem cell
28	chr4:1107000-1108200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr4:1107000-1108200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:1107000-1108200	Active TSS	Fetal Brain Female	brain
31	chr4:1107000-1108200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
32	chr4:1107000-1108400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:1107000-1108400	Active TSS	Osteobl	bone
34	chr4:1107000-1108600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links