Variant report

Variant	rs370482335
Chromosome Location	chr3:52409278-52409279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52384981..52388271-chr3:52408939..52411277,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv984542	chr3:52285682-52516115	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
3	nsv834696	chr3:52317478-52479537	Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
4	nsv834697	chr3:52400578-52579417	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv590302	chr3:52407933-52428988	Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52374200-52427000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:52379400-52410600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:52385400-52434600	Weak transcription	Small Intestine	intestine
4	chr3:52393200-52434800	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:52395000-52443200	Weak transcription	Right Atrium	heart
6	chr3:52395400-52409400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:52395400-52433200	Weak transcription	HSMMtube	muscle
8	chr3:52397800-52433000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:52398000-52425200	Weak transcription	Left Ventricle	heart
10	chr3:52399000-52409400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:52399400-52409400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:52401000-52409400	Weak transcription	Esophagus	oesophagus
13	chr3:52401200-52409400	Weak transcription	Colonic Mucosa	Colon
14	chr3:52403400-52433800	Weak transcription	Brain Germinal Matrix	brain
15	chr3:52405000-52409400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:52405000-52409400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:52405200-52425000	Weak transcription	Aorta	Aorta
18	chr3:52405400-52425200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:52406200-52409400	Enhancers	GM12878-XiMat	blood
20	chr3:52406400-52409400	Weak transcription	Brain Anterior Caudate	brain
21	chr3:52406400-52409400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:52406400-52425400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:52406600-52409400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:52406600-52409400	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:52406600-52409400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:52406600-52409400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:52406800-52409400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:52407200-52413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:52407200-52422200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:52407400-52409400	Weak transcription	Ovary	ovary
31	chr3:52407600-52412400	Weak transcription	Thymus	Thymus
32	chr3:52407600-52413800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:52407600-52420800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:52407800-52409400	Weak transcription	Adipose Nuclei	Adipose
35	chr3:52407800-52421600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr3:52408000-52409400	Weak transcription	Primary B cells from cord blood	blood
37	chr3:52408000-52409400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:52408000-52409600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:52408000-52412000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:52408000-52419200	Weak transcription	Fetal Thymus	thymus
41	chr3:52408000-52421800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:52408000-52433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:52408000-52436600	Weak transcription	Fetal Kidney	kidney
44	chr3:52408600-52409400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:52408600-52411200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:52408600-52421000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:52408800-52409400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:52408800-52414000	Weak transcription	K562	blood
49	chr3:52409000-52410400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr3:52409000-52411000	Strong transcription	Primary T cells from cord blood	blood

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