Variant report

Variant	rs370493409
Chromosome Location	chr10:116528422-116528423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116526447..116528712-chr10:116580718..116582885,3	MCF-7	breast:
2	chr10:116510537..116513350-chr10:116526093..116528633,2	MCF-7	breast:
3	chr10:116528299..116531150-chr10:116536234..116538726,2	MCF-7	breast:
4	chr10:116512788..116514605-chr10:116528016..116530958,2	MCF-7	breast:
5	chr10:116469822..116472730-chr10:116527178..116529089,2	MCF-7	breast:
6	chr10:116520053..116522860-chr10:116528096..116531529,3	K562	blood:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116526200-116528600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:116526200-116528600	Active TSS	Right Ventricle	heart
3	chr10:116526600-116528600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr10:116526600-116528800	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr10:116526800-116528600	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr10:116526800-116528600	Active TSS	Rectal Smooth Muscle	rectum
7	chr10:116526800-116528800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:116527000-116528600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr10:116527000-116528600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:116527000-116528600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:116527200-116528600	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:116527200-116528600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:116527200-116528600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:116527200-116528600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:116527200-116528800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr10:116527400-116528600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:116527400-116528600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr10:116527400-116528600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr10:116527400-116528600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:116527400-116528600	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr10:116527600-116528600	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
22	chr10:116527600-116528600	Active TSS	Primary hematopoietic stem cells	blood
23	chr10:116527600-116528600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:116527600-116528600	Active TSS	Duodenum Mucosa	Duodenum
25	chr10:116527600-116528800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:116527600-116528800	Active TSS	Brain Cingulate Gyrus	brain
27	chr10:116527800-116528600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:116527800-116528600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
29	chr10:116527800-116528600	Bivalent Enhancer	Fetal Thymus	thymus
30	chr10:116528000-116528600	Active TSS	Psoas Muscle	Psoas
31	chr10:116528200-116528600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
32	chr10:116528200-116528600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:116528200-116528600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:116528200-116528600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
35	chr10:116528200-116528600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:116528200-116528600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:116528200-116528600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:116528200-116528600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:116528200-116528600	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr10:116528200-116528600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr10:116528200-116528600	Enhancers	Small Intestine	intestine
42	chr10:116528200-116528600	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr10:116528400-116528600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:116528400-116528600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr10:116528400-116528600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
46	chr10:116528400-116528600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:116528400-116528600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:116528400-116528600	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr10:116528400-116528600	Bivalent Enhancer	Brain Hippocampus Middle	brain
50	chr10:116528400-116528600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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