Variant report

Variant	rs370512803
Chromosome Location	chr3:146237099-146237100
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:146233779-146237765	K562	blood:	n/a	n/a
2	POLR2A	chr3:146237095-146237299	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr3:146236415-146237164	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:146236451..146238019-chr3:146239064..146241135,2	K562	blood:
2	chr3:146235526..146237104-chr3:146242784..146244517,2	K562	blood:
3	chr3:146228241..146231154-chr3:146236988..146238533,2	K562	blood:

Variant related genes	Relation type
PLSCR1	TF binding region
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448053	chr3:146186791-146262066	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3523751	chr3:146186838-146261806	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3523753	chr3:146186838-146261806	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2496437	chr3:146186902-146262961	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv822282	chr3:146237047-146238935	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146222800-146237200	Weak transcription	GM12878-XiMat	blood
2	chr3:146224200-146246400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:146224600-146241000	Weak transcription	Fetal Kidney	kidney
4	chr3:146224800-146254400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:146225000-146240800	Weak transcription	Small Intestine	intestine
6	chr3:146225400-146240600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:146225400-146255000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:146225400-146256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:146225400-146257000	Weak transcription	Right Ventricle	heart
10	chr3:146225400-146260800	Weak transcription	NH-A	brain
11	chr3:146225600-146240400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:146225600-146252200	Weak transcription	Psoas Muscle	Psoas
13	chr3:146225600-146258600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:146226000-146241400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:146226200-146240800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:146226200-146245800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:146228000-146248200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:146229000-146253200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr3:146229000-146259600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:146229400-146252200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:146229800-146257000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:146230400-146248600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:146230600-146241400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:146231000-146240000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:146231400-146242800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:146231600-146238800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:146231600-146239400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:146231600-146250800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:146231600-146254400	Weak transcription	Brain Anterior Caudate	brain
30	chr3:146231600-146254400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:146231600-146257200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:146231600-146258600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:146231600-146259000	Weak transcription	Brain Angular Gyrus	brain
34	chr3:146231600-146260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:146231800-146240800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:146231800-146242600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:146231800-146242800	Weak transcription	Osteobl	bone
38	chr3:146231800-146254000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr3:146231800-146254400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:146232000-146239000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:146232000-146239600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr3:146232000-146257400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:146232000-146259600	Weak transcription	NHDF-Ad	bronchial
44	chr3:146232600-146240000	Strong transcription	Hela-S3	cervix
45	chr3:146232600-146248400	Weak transcription	HMEC	breast
46	chr3:146232800-146240200	Weak transcription	Ovary	ovary
47	chr3:146232800-146241000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr3:146232800-146248600	Weak transcription	Aorta	Aorta
49	chr3:146232800-146250200	Weak transcription	Pancreas	Pancrea
50	chr3:146232800-146254400	Weak transcription	Rectal Smooth Muscle	rectum

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