Variant report

Variant	rs370537863
Chromosome Location	chr5:57333777-57333778
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57322198..57324541-chr5:57332410..57334350,3	MCF-7	breast:
2	chr5:57323308..57324878-chr5:57332622..57334138,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv508357	chr5:57304472-57360187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1015769	chr5:57309031-57338357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv598229	chr5:57309072-57345166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv4840	chr5:57311002-57352746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2763867	chr5:57314217-57360670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3434910	chr5:57317244-57340175	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3324417	chr5:57318244-57336897	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv1821795	chr5:57320343-57336494	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	nsv272	chr5:57320938-57339546	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3468460	chr5:57321495-57335693	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv1017266	chr5:57321586-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv1031966	chr5:57321586-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv2582711	chr5:57321618-57334013	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv1033414	chr5:57321646-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv1023958	chr5:57321646-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3505343	chr5:57322295-57334943	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv3468462	chr5:57322420-57335068	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	esv3505339	chr5:57322720-57334868	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv2449363	chr5:57322744-57334340	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv436489	chr5:57322863-57333906	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv3505337	chr5:57322998-57334018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv3505341	chr5:57323057-57336140	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
29	esv3468455	chr5:57323072-57334221	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv3468459	chr5:57323245-57334293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv6892	chr5:57323264-57334030	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv990080	chr5:57323297-57333882	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv2281094	chr5:57323302-57333964	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv3505346	chr5:57323349-57333882	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv3468461	chr5:57323363-57333859	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3505345	chr5:57323369-57333891	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv513239	chr5:57323372-57334072	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv3505347	chr5:57323390-57333821	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv3505338	chr5:57323392-57333815	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv3468458	chr5:57323401-57333850	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv3468457	chr5:57323403-57333849	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv3468464	chr5:57323412-57333804	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv3505336	chr5:57323419-57333829	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv3505342	chr5:57323421-57333823	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	esv4050	chr5:57323436-57333843	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv3344958	chr5:57323439-57333799	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
47	nsv10701	chr5:57323456-57336171	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
48	esv3468456	chr5:57323463-57333783	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv3505344	chr5:57323470-57333788	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv499085	chr5:57323476-57333781	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57332600-57338200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links