Variant report

Variant	rs370549595
Chromosome Location	chr10:98591248-98591249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IKZF1	chr10:98591106-98591619	GM12878	blood:	n/a	n/a
2	MYC	chr10:98591214-98592929	A549	lung:	n/a	chr10:98591712-98591722
3	ARID3A	chr10:98591206-98591623	HepG2	liver:	n/a	n/a
4	TBL1XR1	chr10:98591208-98592684	K562	blood:	n/a	n/a
5	EP300	chr10:98591196-98592070	K562	blood:	n/a	chr10:98591775-98591782 chr10:98591556-98591570
6	TBL1XR1	chr10:98591055-98591332	K562	blood:	n/a	n/a
7	E2F4	chr10:98591163-98592818	MCF10A-Er-Src	breast:	n/a	chr10:98591751-98591760 chr10:98592308-98592322 chr10:98591716-98591726 chr10:98591815-98591825 chr10:98591757-98591767
8	ZNF384	chr10:98591203-98592208	K562	blood:	n/a	n/a
9	MAZ	chr10:98590958-98594417	IMR90	lung:	n/a	chr10:98593391-98593400 chr10:98591712-98591722 chr10:98594053-98594062 chr10:98593017-98593027
10	STAT3	chr10:98591197-98591695	MCF10A-Er-Src	breast:	n/a	chr10:98591540-98591551 chr10:98591321-98591328 chr10:98591360-98591368
11	POLR2A	chr10:98591183-98592806	MCF10A-Er-Src	breast:	n/a	n/a
12	MXI1	chr10:98591211-98594581	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr10:98590930-98593013	PBDE	blood:	n/a	n/a
14	IRF1	chr10:98590983-98591755	K562	blood:	n/a	chr10:98591711-98591725
15	MAZ	chr10:98591091-98591291	HepG2	liver:	n/a	n/a
16	MXI1	chr10:98590975-98594494	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:98524912..98526111-chr10:98589792..98591303,11	MCF-7	breast:
2	chr10:98590420..98592007-chr10:98615843..98619097,3	K562	blood:
3	chr10:98591162..98592122-chr7:106809872..106810661,2	Hela-S3	cervix:
4	chr10:98398475..98400373-chr10:98590281..98591916,2	MCF-7	breast:
5	chr10:98392223..98394189-chr10:98590324..98593027,3	MCF-7	breast:
6	chr10:98272672..98275170-chr10:98590720..98593680,2	MCF-7	breast:
7	chr10:98584665..98586917-chr10:98589906..98591474,2	K562	blood:
8	chr10:98133863..98136449-chr10:98590863..98592811,2	MCF-7	breast:
9	chr10:98523538..98526378-chr10:98589191..98591883,2	MCF-7	breast:
10	chr10:98345052..98347789-chr10:98590945..98593407,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIK3AP1-6	chr10:98590424-98592003	NONHSAT015837

Variant related genes	Relation type
MIR607	TF binding region
LCOR	TF binding region
ENSG00000105856	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000095587	Chromatin interaction
ENSG00000155629	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3427855	chr10:98590262-98594060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3419281	chr10:98590962-98594060	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv3420262	chr10:98590987-98593835	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98587200-98591400	Weak transcription	Left Ventricle	heart
2	chr10:98590000-98591400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:98590000-98591400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:98590000-98591400	Enhancers	Small Intestine	intestine
5	chr10:98590000-98591600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:98590000-98591600	Enhancers	Stomach Mucosa	stomach
7	chr10:98590200-98594600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr10:98590400-98594400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr10:98590400-98594400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr10:98590600-98591400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr10:98590600-98591600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:98590600-98594400	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr10:98590800-98591400	Flanking Active TSS	GM12878-XiMat	blood
14	chr10:98590800-98591600	Flanking Active TSS	Dnd41	blood
15	chr10:98590800-98591600	Flanking Active TSS	Hela-S3	cervix
16	chr10:98590800-98591600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr10:98590800-98591600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr10:98590800-98593600	Active TSS	Rectal Smooth Muscle	rectum
19	chr10:98590800-98594000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:98591000-98591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:98591000-98591400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:98591000-98591400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr10:98591000-98591400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:98591000-98591400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr10:98591000-98591400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:98591000-98591400	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr10:98591000-98591400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr10:98591000-98591400	Weak transcription	Lung	lung
29	chr10:98591000-98591400	Weak transcription	Spleen	Spleen
30	chr10:98591000-98591400	Flanking Active TSS	HepG2	liver
31	chr10:98591000-98591400	Enhancers	HSMM	muscle
32	chr10:98591000-98591600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr10:98591000-98591600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr10:98591000-98591600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr10:98591000-98591600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:98591000-98591600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:98591000-98591600	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr10:98591000-98591600	Flanking Active TSS	A549	lung
39	chr10:98591000-98591600	Flanking Active TSS	NHEK	skin
40	chr10:98591000-98591600	Flanking Active TSS	Osteobl	bone
41	chr10:98591000-98591800	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr10:98591000-98591800	Active TSS	Right Atrium	heart
43	chr10:98591000-98593200	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr10:98591000-98593200	Active TSS	Thymus	Thymus
45	chr10:98591000-98593400	Active TSS	Stomach Smooth Muscle	stomach
46	chr10:98591000-98593400	Active TSS	NH-A	brain
47	chr10:98591000-98593800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:98591000-98594000	Active TSS	Fetal Lung	lung
49	chr10:98591000-98594400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:98591000-98594800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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