Variant report

Variant	rs370563061
Chromosome Location	chrX:153714315-153714316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:153644453..153647083-chrX:153713946..153716046,3	MCF-7	breast:
2	chrX:153711098..153721097-chrX:153740825..153747830,28	MCF-7	breast:
3	chrX:153711537..153716459-chrX:153767417..153772470,5	K562	blood:
4	chrX:153712862..153716379-chrX:153773449..153776383,5	MCF-7	breast:
5	chrX:153605453..153609525-chrX:153712051..153716179,6	MCF-7	breast:
6	chrX:153605593..153609893-chrX:153711571..153716768,6	K562	blood:
7	chrX:153671368..153673500-chrX:153711760..153714684,2	K562	blood:
8	X:153657611-153671976..X:153701576-153715648	Hela-S3	cervix:
9	chr20:52824614..52827050-chrX:153713627..153715899,2	MCF-7	breast:
10	chrX:153624545..153632466-chrX:153709449..153721332,27	K562	blood:
11	chrX:153713288..153721499-chrX:153767815..153773161,10	MCF-7	breast:
12	chrX:153697571..153703616-chrX:153709529..153715825,8	MCF-7	breast:
13	chrX:153691004..153695395-chrX:153711545..153717567,7	MCF-7	breast:
14	chrX:153624383..153633652-chrX:153704408..153721325,48	MCF-7	breast:
15	chrX:153624542..153632362-chrX:153710560..153721332,23	K562	blood:
16	chrX:153639142..153641724-chrX:153713465..153715375,4	MCF-7	breast:
17	chrX:153711592..153716888-chrX:153760694..153766504,10	MCF-7	breast:
18	chrX:153713355..153716352-chrX:153738180..153740001,2	K562	blood:
19	chrX:153674318..153677222-chrX:153712203..153714813,3	K562	blood:
20	chrX:153713383..153715797-chrX:153769453..153771661,2	K562	blood:
21	chrX:153598007..153604368-chrX:153709391..153720590,15	MCF-7	breast:
22	chrX:153711607..153725784-chrX:153738770..153748754,27	K562	blood:
23	chrX:153635755..153638655-chrX:153711241..153715335,3	K562	blood:
24	chrX:153711367..153718079-chrX:153742298..153748484,13	K562	blood:
25	chrX:153596460..153601893-chrX:153713560..153721410,16	MCF-7	breast:
26	chrX:153576705..153579564-chrX:153713461..153716046,2	MCF-7	breast:
27	chrX:153684734..153690386-chrX:153710045..153718317,11	K562	blood:
28	chrX:153661692..153667668-chrX:153711020..153716574,8	MCF-7	breast:
29	chrX:153669908..153672690-chrX:153713868..153717711,4	MCF-7	breast:
30	chrX:153713080..153721291-chrX:153722442..153727868,15	K562	blood:
31	chrX:153684737..153690252-chrX:153712522..153716734,15	MCF-7	breast:
32	chr16:31190898..31191887-chrX:153714080..153715002,2	Hela-S3	cervix:
33	chrX:153234477..153236480-chrX:153714089..153717072,2	K562	blood:
34	chrX:153601928..153604764-chrX:153713001..153716367,3	MCF-7	breast:
35	chrX:153639079..153641453-chrX:153714284..153716430,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000102119	Chromatin interaction
ENSG00000261773	Chromatin interaction
ENSG00000264631	Chromatin interaction
ENSG00000264484	Chromatin interaction
ENSG00000071553	Chromatin interaction
ENSG00000102125	Chromatin interaction
ENSG00000013563	Chromatin interaction
ENSG00000071889	Chromatin interaction
ENSG00000264783	Chromatin interaction
ENSG00000130827	Chromatin interaction
ENSG00000160211	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000073009	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000235802	Chromatin interaction
ENSG00000203879	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000071859	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33199	chrX:152864376-153820241	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
2	nsv528291	chrX:152864376-153827637	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
3	nsv915605	chrX:153333946-153783638	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
4	nsv519042	chrX:153348431-153829693	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
5	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
6	nsv532963	chrX:153576890-153822717	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	195 gene(s)	inside rSNPs	diseases
7	nsv530281	chrX:153622940-153783184	Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
8	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
9	esv3433124	chrX:153714108-153716206	Flanking Active TSS Genic enhancers Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153710200-153719600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chrX:153711400-153718600	ZNF genes & repeats	Fetal Stomach	stomach
3	chrX:153712400-153714400	Enhancers	Placenta Amnion	Placenta Amnion
4	chrX:153712600-153714400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chrX:153712600-153714400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
6	chrX:153712600-153714600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
7	chrX:153712800-153714400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chrX:153713000-153714400	Enhancers	Primary hematopoietic stem cells	blood
9	chrX:153713200-153714400	Enhancers	Primary B cells from cord blood	blood
10	chrX:153713200-153714400	Enhancers	Fetal Brain Male	brain
11	chrX:153713200-153714800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chrX:153713400-153715200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chrX:153713600-153714400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chrX:153713600-153714400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chrX:153713600-153714600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chrX:153713800-153714400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chrX:153713800-153714400	Flanking Active TSS	Brain Angular Gyrus	brain
18	chrX:153713800-153714400	Flanking Active TSS	HMEC	breast
19	chrX:153713800-153714600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chrX:153713800-153715400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chrX:153713800-153715400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chrX:153713800-153715600	Active TSS	Psoas Muscle	Psoas
23	chrX:153713800-153715600	Active TSS	HSMM	muscle
24	chrX:153714000-153714400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chrX:153714000-153714400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chrX:153714000-153714400	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chrX:153714000-153714400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chrX:153714000-153714400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chrX:153714000-153714400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chrX:153714000-153714400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chrX:153714000-153714400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chrX:153714000-153714400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chrX:153714000-153714400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chrX:153714000-153714400	Flanking Active TSS	Esophagus	oesophagus
35	chrX:153714000-153714400	Bivalent Enhancer	Placenta	Placenta
36	chrX:153714000-153714400	Flanking Active TSS	Fetal Thymus	thymus
37	chrX:153714000-153714400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chrX:153714000-153714400	Flanking Active TSS	Stomach Mucosa	stomach
39	chrX:153714000-153714400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chrX:153714000-153714400	Flanking Active TSS	Thymus	Thymus
41	chrX:153714000-153714400	Flanking Active TSS	Dnd41	blood
42	chrX:153714000-153714400	Flanking Active TSS	NH-A	brain
43	chrX:153714000-153714600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chrX:153714000-153714600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chrX:153714000-153714600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chrX:153714000-153714600	Flanking Active TSS	Adipose Nuclei	Adipose
47	chrX:153714000-153714800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chrX:153714000-153714800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chrX:153714000-153715200	Active TSS	Brain Hippocampus Middle	brain
50	chrX:153714000-153715200	Active TSS	Right Ventricle	heart

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