Variant report

Variant	rs370568281
Chromosome Location	chr21:17102744-17102745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:17101236..17104015-chr21:17196099..17198458,3	MCF-7	breast:
2	chr21:17099652..17105374-chr21:17196149..17200245,6	MCF-7	breast:
3	chr21:17064915..17067118-chr21:17101217..17104804,3	MCF-7	breast:
4	chr1:28907941..28908781-chr21:17101990..17102822,2	Hela-S3	cervix:
5	chr21:17102586..17104212-chr21:17132608..17135141,2	K562	blood:
6	chr21:17102096..17103087-chrX:134185661..134186938,3	Hela-S3	cervix:
7	chr21:17079550..17081634-chr21:17101174..17103507,3	MCF-7	breast:
8	chr21:17102502..17103070-chr9:128003344..128004042,2	Hela-S3	cervix:
9	chr21:17064242..17066910-chr21:17102295..17103877,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000239705	Chromatin interaction
ENSG00000155313	Chromatin interaction
ENSG00000238591	Chromatin interaction
ENSG00000197989	Chromatin interaction
ENSG00000203950	Chromatin interaction
ENSG00000221497	Chromatin interaction
ENSG00000044574	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762093	chr21:16948663-17145770	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064683	chr21:16954570-17145758	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv459099	chr21:16956866-17145011	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv587076	chr21:16956866-17145011	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1062105	chr21:16956885-17141961	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv544380	chr21:16956885-17141961	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1059500	chr21:16957752-17145758	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv2830057	chr21:16960590-17113148	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv3323481	chr21:17101106-17103654	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
10	esv3429322	chr21:17101431-17103829	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17101400-17102800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr21:17101400-17103400	Active TSS	Duodenum Mucosa	Duodenum
3	chr21:17101400-17103600	Active TSS	Brain Cingulate Gyrus	brain
4	chr21:17101400-17104000	Active TSS	Brain Anterior Caudate	brain
5	chr21:17101400-17104000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr21:17101600-17103400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr21:17101600-17103400	Active TSS	Brain Hippocampus Middle	brain
8	chr21:17101600-17103400	Active TSS	Fetal Brain Female	brain
9	chr21:17101600-17103400	Active TSS	Fetal Lung	lung
10	chr21:17101600-17103600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr21:17101600-17103600	Active TSS	Primary monocytes fromperipheralblood	blood
12	chr21:17101600-17103600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr21:17101600-17103600	Active TSS	Brain Germinal Matrix	brain
14	chr21:17101600-17103600	Active TSS	Brain Substantia Nigra	brain
15	chr21:17101600-17103600	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr21:17101600-17103600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr21:17101600-17104000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr21:17101600-17104200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr21:17101600-17104200	Active TSS	Fetal Intestine Large	intestine
20	chr21:17101600-17104600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr21:17101600-17104600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr21:17101600-17104600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr21:17101600-17104600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr21:17101600-17104800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr21:17101600-17104800	Active TSS	Colon Smooth Muscle	Colon
26	chr21:17101600-17105000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr21:17101600-17105000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr21:17101600-17105000	Active TSS	Fetal Intestine Small	intestine
29	chr21:17101600-17105000	Active TSS	NHDF-Ad	bronchial
30	chr21:17101600-17105200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr21:17101600-17105200	Active TSS	Right Ventricle	heart
32	chr21:17101600-17105400	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr21:17101600-17105400	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr21:17101600-17105400	Active TSS	Stomach Smooth Muscle	stomach
35	chr21:17101600-17105600	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr21:17101600-17105800	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr21:17101600-17105800	Active TSS	K562	blood
38	chr21:17101800-17103000	Active TSS	Brain Angular Gyrus	brain
39	chr21:17101800-17103200	Active TSS	Spleen	Spleen
40	chr21:17101800-17103400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr21:17101800-17103400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr21:17101800-17103400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr21:17101800-17103400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr21:17101800-17103400	Active TSS	Gastric	stomach
45	chr21:17101800-17103600	Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr21:17101800-17103800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr21:17101800-17103800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr21:17101800-17103800	Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr21:17101800-17103800	Active TSS	Esophagus	oesophagus
50	chr21:17101800-17103800	Active TSS	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links