Variant report

Variant	rs370588542
Chromosome Location	chr4:166251640-166251641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166248835..166250547-chr4:166251406..166253034,2	MCF-7	breast:
2	chr4:166251079..166252856-chr4:166258884..166260563,2	MCF-7	breast:
3	chr4:166249129..166252121-chr4:166265324..166266921,2	K562	blood:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289926	chr4:166250805-166251867	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166247600-166251800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:166247800-166251800	Active TSS	HSMMtube	muscle
3	chr4:166247800-166253600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:166248000-166252000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:166248000-166253200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:166248000-166253600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:166249400-166251800	Flanking Active TSS	HUVEC	blood vessel
8	chr4:166249600-166254000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:166249600-166254000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
11	chr4:166249800-166251800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:166249800-166252200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:166249800-166255000	Weak transcription	Placenta	Placenta
14	chr4:166249800-166262400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:166249800-166262600	Weak transcription	Thymus	Thymus
16	chr4:166250000-166252000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:166250000-166253600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:166250000-166254600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:166250200-166251800	Weak transcription	Gastric	stomach
21	chr4:166250200-166251800	Weak transcription	Lung	lung
22	chr4:166250200-166254000	Enhancers	Fetal Lung	lung
23	chr4:166250200-166254000	Transcr. at gene 5' and 3'	K562	blood
24	chr4:166250200-166259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:166250200-166260400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:166250200-166260800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:166250200-166262600	Weak transcription	Spleen	Spleen
28	chr4:166250200-166262800	Weak transcription	Right Ventricle	heart
29	chr4:166250200-166263800	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
31	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:166250400-166251800	Enhancers	Brain Substantia Nigra	brain
33	chr4:166250400-166252400	Enhancers	Ovary	ovary
34	chr4:166250400-166253000	Weak transcription	Right Atrium	heart
35	chr4:166250400-166254000	Transcr. at gene 5' and 3'	Dnd41	blood
36	chr4:166250400-166255000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr4:166250400-166255000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:166250400-166255200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr4:166250400-166255400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr4:166250400-166255800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:166250400-166256000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:166250400-166259600	Weak transcription	Fetal Kidney	kidney
43	chr4:166250400-166260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr4:166250400-166260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr4:166250400-166262600	Weak transcription	Aorta	Aorta
46	chr4:166250600-166251800	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:166250600-166252000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr4:166250600-166252600	Weak transcription	Small Intestine	intestine
49	chr4:166250600-166253200	Weak transcription	Fetal Heart	heart
50	chr4:166250600-166253600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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