Variant report

Variant	rs370597931
Chromosome Location	chr8:104091238-104091239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104090004..104092160-chr8:104092634..104094909,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv891247	chr8:104090979-104121862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104083600-104093000	Weak transcription	Placenta	Placenta
2	chr8:104087600-104093200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:104088400-104091600	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:104088600-104092000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:104089000-104091600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr8:104089400-104091600	Enhancers	Liver	Liver
7	chr8:104090200-104091400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr8:104090200-104091400	Enhancers	NHEK	skin
9	chr8:104090200-104091600	Enhancers	Primary B cells from cord blood	blood
10	chr8:104090200-104091600	Enhancers	K562	blood
11	chr8:104090400-104091400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr8:104090400-104091400	Weak transcription	Pancreas	Pancrea
13	chr8:104090400-104091600	Enhancers	Fetal Stomach	stomach
14	chr8:104090400-104091800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr8:104090400-104093000	Weak transcription	Gastric	stomach
16	chr8:104090400-104093000	Weak transcription	Lung	lung
17	chr8:104090600-104091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:104090600-104091400	Active TSS	Brain Angular Gyrus	brain
19	chr8:104090600-104091400	Active TSS	Colonic Mucosa	Colon
20	chr8:104090600-104091400	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:104090600-104091400	Flanking Active TSS	HUVEC	blood vessel
22	chr8:104090600-104091600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr8:104090800-104091400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:104090800-104091400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:104090800-104091400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:104090800-104091400	Active TSS	Aorta	Aorta
27	chr8:104090800-104091400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr8:104090800-104091400	Bivalent Enhancer	Fetal Intestine Small	intestine
29	chr8:104090800-104091400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
30	chr8:104090800-104091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:104090800-104092200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:104091000-104091400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
33	chr8:104091000-104091400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
34	chr8:104091000-104091400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr8:104091000-104091400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr8:104091000-104091400	Active TSS	Stomach Smooth Muscle	stomach
37	chr8:104091000-104091400	Flanking Active TSS	NHDF-Ad	bronchial
38	chr8:104091000-104091600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:104091000-104091600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:104091000-104091600	Enhancers	Fetal Brain Male	brain
41	chr8:104091000-104091600	Bivalent Enhancer	Fetal Intestine Large	intestine
42	chr8:104091000-104091600	Enhancers	Fetal Muscle Leg	muscle
43	chr8:104091200-104091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:104091200-104091400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr8:104091200-104091400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
46	chr8:104091200-104091400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
47	chr8:104091200-104091400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:104091200-104091400	Enhancers	Brain Cingulate Gyrus	brain
49	chr8:104091200-104091400	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr8:104091200-104091400	Flanking Active TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links