Variant report

Variant	rs370751571
Chromosome Location	chr4:22502099-22502100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22501387..22504925-chr4:22515596..22518632,4	MCF-7	breast:
2	chr4:22500720..22505653-chr4:22515837..22519334,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152990	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3502402	chr4:22501930-22502273	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3502403	chr4:22501940-22502243	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3464906	chr4:22501975-22502196	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv5125	chr4:22501983-22502265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3464905	chr4:22501986-22502232	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3502405	chr4:22502006-22502212	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3464904	chr4:22502051-22502167	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3502404	chr4:22502061-22502166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3464907	chr4:22502065-22502164	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3502406	chr4:22502065-22502164	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv289612	chr4:22502066-22502163	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22485000-22506000	Weak transcription	Esophagus	oesophagus
2	chr4:22488400-22503000	Weak transcription	Small Intestine	intestine
3	chr4:22488600-22516000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:22488800-22503600	Weak transcription	NHLF	lung
5	chr4:22489600-22503800	Weak transcription	HSMM	muscle
6	chr4:22490200-22503600	Weak transcription	Right Ventricle	heart
7	chr4:22490200-22508600	Weak transcription	Right Atrium	heart
8	chr4:22492800-22506000	Weak transcription	Lung	lung
9	chr4:22493200-22504000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:22493800-22506200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:22497000-22515600	Weak transcription	Fetal Stomach	stomach
12	chr4:22497200-22506000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:22498400-22502600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:22498400-22503400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:22500000-22508200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:22500200-22502800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:22500400-22502200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr4:22500400-22502600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:22500400-22503400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:22500400-22504200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:22500400-22504400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:22500400-22510600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:22500400-22510600	Enhancers	HMEC	breast
24	chr4:22500600-22502200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr4:22500600-22503000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:22500600-22503000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr4:22500600-22503200	Enhancers	Colon Smooth Muscle	Colon
28	chr4:22500600-22504200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr4:22500600-22504400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr4:22500600-22504600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr4:22500600-22505600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr4:22500600-22507800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:22500600-22510800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:22500800-22506600	Enhancers	Fetal Heart	heart
35	chr4:22500800-22507600	Weak transcription	Ovary	ovary
36	chr4:22501000-22502200	Enhancers	Adipose Nuclei	Adipose
37	chr4:22501000-22502800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr4:22501000-22503200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr4:22501000-22503200	Enhancers	Rectal Smooth Muscle	rectum
40	chr4:22501000-22503600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr4:22501000-22504200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:22501000-22505600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr4:22501000-22506000	Weak transcription	Brain Germinal Matrix	brain
44	chr4:22501200-22502800	Enhancers	Fetal Muscle Leg	muscle
45	chr4:22501200-22503800	Enhancers	Fetal Intestine Large	intestine
46	chr4:22501200-22505000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:22501200-22505200	Weak transcription	Brain Anterior Caudate	brain
48	chr4:22501400-22503800	Enhancers	Fetal Intestine Small	intestine
49	chr4:22501400-22504000	Enhancers	HepG2	liver
50	chr4:22501400-22504200	Enhancers	Liver	Liver

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