Variant report

Variant	rs370775817
Chromosome Location	chr3:137783125-137783126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:137781336..137783358-chr3:137787171..137788980,2	MCF-7	breast:
2	chr3:137748327..137751099-chr3:137781297..137783702,2	MCF-7	breast:
3	chr3:137776797..137779428-chr3:137782269..137783995,2	MCF-7	breast:
4	chr3:137783065..137785092-chr3:137890925..137893820,2	MCF-7	breast:
5	chr12:90428505..90430564-chr3:137781378..137783907,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138231	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2751978	chr3:137715302-137890750	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007857	chr3:137767454-137843106	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1008563	chr3:137776151-137801394	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1002136	chr3:137776151-137806500	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv519971	chr3:137782655-137801213	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv522591	chr3:137782655-137801213	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137744400-137792000	Weak transcription	Fetal Kidney	kidney
2	chr3:137763000-137797600	Weak transcription	Hela-S3	cervix
3	chr3:137766800-137783600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:137767200-137791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:137768200-137787600	Weak transcription	A549	lung
6	chr3:137768600-137783600	Weak transcription	Pancreas	Pancrea
7	chr3:137769800-137785600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:137770200-137783600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:137770400-137783600	Weak transcription	Fetal Lung	lung
10	chr3:137772800-137792200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:137777800-137790000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:137778200-137800600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:137778400-137787400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:137778600-137787600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:137778800-137800400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:137779200-137792400	Strong transcription	Fetal Stomach	stomach
17	chr3:137779600-137787600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:137779800-137787400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:137779800-137787600	Strong transcription	Adipose Nuclei	Adipose
20	chr3:137780000-137783800	Strong transcription	Spleen	Spleen
21	chr3:137780000-137784000	Strong transcription	Ovary	ovary
22	chr3:137780000-137785800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:137780000-137787200	Strong transcription	Aorta	Aorta
24	chr3:137780000-137792600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:137780000-137792600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:137780000-137797600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:137780000-137813400	Weak transcription	HUVEC	blood vessel
28	chr3:137780200-137783200	Strong transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:137780200-137786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:137780200-137787600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:137780400-137786600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:137780400-137787200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:137780400-137787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:137780400-137787600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:137780400-137792400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr3:137780600-137784600	Weak transcription	GM12878-XiMat	blood
37	chr3:137780600-137786200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:137780600-137787200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:137780600-137787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:137780600-137788000	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:137780600-137791600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:137780600-137811600	Weak transcription	Psoas Muscle	Psoas
43	chr3:137780800-137784200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:137780800-137800600	Weak transcription	Brain Hippocampus Middle	brain
45	chr3:137781000-137784400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr3:137781000-137785600	Strong transcription	Rectal Smooth Muscle	rectum
47	chr3:137781000-137786400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:137781000-137786600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr3:137781000-137833200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr3:137781200-137787600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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