Variant report

Variant	rs370792343
Chromosome Location	chr4:80274725-80274726
allele	-/AG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:33957128..33958102-chr4:80274126..80274833,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv980223	chr4:80259303-80276903	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3427729	chr4:80274284-80276883	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3429885	chr4:80274432-80274725	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3411471	chr4:80274508-80274764	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3329145	chr4:80274554-80274760	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3432913	chr4:80274683-80416584	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80273400-80274800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:80273400-80274800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:80273400-80274800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:80273400-80274800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:80273400-80274800	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr4:80273400-80274800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr4:80273400-80274800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
8	chr4:80273400-80274800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr4:80273400-80274800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:80273400-80274800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr4:80273400-80274800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:80273400-80274800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:80273400-80274800	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr4:80273400-80274800	ZNF genes & repeats	Colon Smooth Muscle	Colon
15	chr4:80273400-80274800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr4:80273400-80274800	ZNF genes & repeats	Ovary	ovary
17	chr4:80273400-80274800	ZNF genes & repeats	HUVEC	blood vessel
18	chr4:80273600-80274800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr4:80273600-80274800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
20	chr4:80273600-80274800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:80273600-80274800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:80273600-80274800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr4:80273600-80274800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr4:80273600-80274800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr4:80273600-80274800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:80273600-80274800	ZNF genes & repeats	Brain Angular Gyrus	brain
27	chr4:80273600-80274800	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr4:80273600-80274800	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr4:80273600-80274800	ZNF genes & repeats	Colonic Mucosa	Colon
30	chr4:80273600-80274800	ZNF genes & repeats	Fetal Brain Male	brain
31	chr4:80273600-80274800	ZNF genes & repeats	Fetal Heart	heart
32	chr4:80273600-80274800	ZNF genes & repeats	Fetal Kidney	kidney
33	chr4:80273600-80274800	ZNF genes & repeats	Fetal Lung	lung
34	chr4:80273600-80274800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
35	chr4:80273600-80274800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr4:80273600-80274800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
37	chr4:80273600-80274800	ZNF genes & repeats	Small Intestine	intestine
38	chr4:80273600-80274800	ZNF genes & repeats	Stomach Mucosa	stomach
39	chr4:80273600-80274800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
40	chr4:80273600-80274800	ZNF genes & repeats	Thymus	Thymus
41	chr4:80273600-80274800	ZNF genes & repeats	Spleen	Spleen
42	chr4:80273600-80274800	ZNF genes & repeats	GM12878-XiMat	blood
43	chr4:80273600-80274800	ZNF genes & repeats	HSMMtube	muscle
44	chr4:80273600-80274800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr4:80273600-80274800	ZNF genes & repeats	NHDF-Ad	bronchial
46	chr4:80273600-80274800	ZNF genes & repeats	Osteobl	bone
47	chr4:80273800-80274800	Bivalent/Poised TSS	NHEK	skin
48	chr4:80274200-80274800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
49	chr4:80274200-80274800	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
50	chr4:80274200-80274800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links