Variant report
| Variant | rs370835293 |
|---|---|
| Chromosome Location | chr10:37238045-37238046 |
| allele | -/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA2 | chr10:37237867-37238141 | A549 | lung: | n/a | n/a |
| 2 | CEBPB | chr10:37237949-37238152 | A549 | lung: | n/a | n/a |
| 3 | CEBPB | chr10:37237972-37238212 | A549 | lung: | n/a | n/a |
| 4 | FOXA2 | chr10:37237939-37238177 | A549 | lung: | n/a | n/a |
| 5 | CEBPB | chr10:37237969-37238202 | A549 | lung: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:37235121..37239271-chr11:80409881..80413135,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MKNK2P1 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1036571 | chr10:37172804-37396508 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1052867 | chr10:37196806-37323802 | Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046197 | chr10:37200503-37333823 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv971861 | chr10:37231652-37239745 | Active TSS Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv6376 | chr10:37234719-37279876 | Active TSS ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv895022 | chr10:37238001-37274522 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
