Variant report

Variant	rs370898261
Chromosome Location	chr6:11537090-11537091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:11537075-11537196	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:11536994-11537339	HL-60	blood:	n/a	n/a
3	REST	chr6:11535699-11537243	HL-60	blood:	n/a	n/a
4	MAZ	chr6:11536838-11537184	GM12878	blood:	n/a	n/a
5	REST	chr6:11537064-11537275	HepG2	liver:	n/a	n/a
6	HDAC2	chr6:11537072-11537283	H1-hESC	embryonic stem cell:	n/a	chr6:11537086-11537100
7	MXI1	chr6:11536790-11540132	SK-N-SH	brain:	n/a	n/a
8	MTA3	chr6:11536884-11538309	GM12878	blood:	n/a	n/a
9	GATA2	chr6:11537078-11538141	SH-SY5Y	brain:	n/a	chr6:11537395-11537403
10	POLR2A	chr6:11537084-11538307	Raji	blood:	n/a	n/a
11	REST	chr6:11536942-11538019	PFSK-1	brain:	n/a	chr6:11537853-11537863 chr6:11537525-11537538 chr6:11537576-11537589 chr6:11537558-11537571
12	REST	chr6:11535759-11537343	ECC-1	luminal epithelium:	n/a	n/a
13	REST	chr6:11536965-11537314	PFSK-1	brain:	n/a	n/a
14	CREB1	chr6:11537088-11538449	HepG2	liver:	n/a	n/a
15	TCF7L2	chr6:11536444-11537290	HEK293	kidney:	n/a	n/a
16	RFX5	chr6:11536074-11538333	SK-N-SH	brain:	n/a	n/a
17	SIN3A	chr6:11537017-11539166	H1-hESC	embryonic stem cell:	n/a	chr6:11538369-11538378 chr6:11537781-11537792 chr6:11538081-11538094
18	MAX	chr6:11536987-11538410	HepG2	liver:	n/a	chr6:11537562-11537571 chr6:11537776-11537785
19	POLR2A	chr6:11536956-11539361	HL-60	blood:	n/a	n/a
20	ARID3A	chr6:11536592-11537409	HepG2	liver:	n/a	n/a
21	REST	chr6:11536937-11537263	HepG2	liver:	n/a	n/a
22	RCOR1	chr6:11535607-11538534	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
TMEM170B	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3323084	chr6:11535666-11540364	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11527400-11537200	Weak transcription	Gastric	stomach
2	chr6:11531800-11537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:11536000-11537400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr6:11536400-11540400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:11536600-11537400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:11536800-11537200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:11536800-11537200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr6:11536800-11537200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr6:11536800-11537200	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr6:11536800-11537200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr6:11536800-11537400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:11536800-11537400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr6:11536800-11537400	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr6:11536800-11537400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr6:11536800-11537400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr6:11536800-11537400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:11536800-11537400	Flanking Active TSS	Thymus	Thymus
18	chr6:11536800-11537400	Flanking Active TSS	Dnd41	blood
19	chr6:11536800-11537400	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:11536800-11537600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr6:11536800-11537600	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr6:11536800-11537600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:11536800-11538200	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:11536800-11539200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:11536800-11539200	Active TSS	Psoas Muscle	Psoas
26	chr6:11536800-11539400	Active TSS	H9 Cell Line	embryonic stem cell
27	chr6:11536800-11539400	Active TSS	Fetal Intestine Small	intestine
28	chr6:11536800-11539600	Active TSS	A549	lung
29	chr6:11536800-11540000	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:11536800-11540400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:11537000-11537200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:11537000-11537200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:11537000-11537200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:11537000-11537200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:11537000-11537200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
36	chr6:11537000-11537200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:11537000-11537200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:11537000-11537200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:11537000-11537200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:11537000-11537200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:11537000-11537200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:11537000-11537200	Flanking Active TSS	Fetal Brain Male	brain
43	chr6:11537000-11537200	Flanking Active TSS	Fetal Heart	heart
44	chr6:11537000-11537200	Flanking Active TSS	Fetal Intestine Large	intestine
45	chr6:11537000-11537200	Enhancers	Placenta Amnion	Placenta Amnion
46	chr6:11537000-11537200	Enhancers	Small Intestine	intestine
47	chr6:11537000-11537200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr6:11537000-11537200	Enhancers	HMEC	breast
49	chr6:11537000-11537200	Flanking Active TSS	HSMMtube	muscle
50	chr6:11537000-11537400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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