Variant report

Variant	rs370967053
Chromosome Location	chr3:97850392-97850393
allele	-/GAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:97850378-97850428	HUVEC	blood vessel:	n/a
2	chr3:97850378-97850428	AG09319	gingival:	n/a
3	chr3:97850378-97850428	HRPEpiC	eye:	n/a
4	chr3:97850378-97850428	Caco-2	colon:	n/a
5	chr3:97850378-97850428	RPTEC	kidney:	n/a
6	chr3:97850378-97850428	HRE	kidney:	n/a
7	chr3:97850378-97850428	A549	lung:	n/a
8	chr3:97850378-97850428	HIPEpiC	eye:	n/a
9	chr3:97850378-97850428	ProgFib	skin:	n/a
10	chr3:97850378-97850428	GM19239	blood:	n/a
11	chr3:97850378-97850428	NB4	blood:	n/a
12	chr3:97850378-97850428	SK-N-SH_RA	brain:	n/a
13	chr3:97850378-97850428	HCM	heart:	n/a
14	chr3:97850378-97850428	ECC-1	luminal epithelium:	n/a
15	chr3:97850378-97850428	AG04449	skin:	fetal
16	chr3:97850378-97850428	GM12892	blood:	n/a
17	chr3:97850378-97850428	HMEC	breast:	n/a
18	chr3:97850378-97850428	AG04450	lung:	fetal
19	chr3:97850378-97850428	NHDF-neo	bronchial:	n/a
20	chr3:97850378-97850428	HEK293	kidney:	embryo
21	chr3:97850378-97850428	MCF-7	breast:	n/a
22	chr3:97850378-97850428	PrEC	prostate:	n/a
23	chr3:97850378-97850428	HCF	heart:	n/a
24	chr3:97850378-97850428	SKMC	muscle:	n/a
25	chr3:97850378-97850428	AoSMC	blood vessel:	n/a
26	chr3:97850378-97850428	Hepatocyte	liver:	n/a
27	chr3:97850378-97850428	HNPCEpiC	eye:	n/a
28	chr3:97850378-97850428	Jurkat	blood:	n/a
29	chr3:97850378-97850428	HEEpiC	esophagus:	n/a
30	chr3:97850378-97850428	HAEpiC	amniotic membrane:	n/a
31	chr3:97850378-97850428	HCT-116	colon:	n/a
32	chr3:97850378-97850428	NT2-D1	testis:	n/a
33	chr3:97850378-97850428	LNCaP	prostate:	n/a
34	chr3:97850378-97850428	HRCEpiC	kidney:	n/a
35	chr3:97850378-97850428	GM12878	blood:	n/a
36	chr3:97850378-97850428	PFSK-1	brain:	n/a
37	chr3:97850378-97850428	HL-60	blood:	n/a
38	chr3:97850378-97850428	IMR90	lung:	fetal
39	chr3:97850378-97850428	NH-A	brain:	n/a
40	chr3:97850378-97850428	K562	blood:	n/a
41	chr3:97850378-97850428	SK-N-MC	brain:	n/a
42	chr3:97850378-97850428	U87	brain:	n/a
43	chr3:97850378-97850428	MCF10A-Er-Src	breast:	n/a
44	chr3:97850378-97850428	AG10803	skin:	n/a
45	chr3:97850378-97850428	GM06990	blood:	n/a
46	chr3:97850378-97850428	HepG2	liver:	n/a
47	chr3:97850378-97850428	NHBE	bronchial:	n/a
48	chr3:97850378-97850428	BE2_C	brain:	n/a
49	chr3:97850378-97850428	GM12891	blood:	n/a
50	chr3:97850378-97850428	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
OR5H1	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877207	chr3:97708955-97899294	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3358571	chr3:97845711-97881421	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3340940	chr3:97845804-97881306	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links