Variant report

Variant	rs370974609
Chromosome Location	chr17:16945559-16945560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr17:16945407-16945685	HepG2	liver:	n/a	n/a
2	RUNX3	chr17:16945197-16945667	GM12878	blood:	n/a	n/a
3	SIN3AK20	chr17:16945318-16945610	HepG2	liver:	n/a	n/a
4	MAZ	chr17:16944269-16946136	IMR90	lung:	n/a	n/a
5	ELF1	chr17:16945379-16945668	K562	blood:	n/a	chr17:16945483-16945495 chr17:16945508-16945520
6	ZNF143	chr17:16945082-16945753	K562	blood:	n/a	chr17:16945550-16945560
7	SP1	chr17:16945259-16945833	H1-hESC	embryonic stem cell:	n/a	chr17:16945700-16945712 chr17:16945702-16945711 chr17:16945459-16945473 chr17:16945700-16945712 chr17:16945701-16945710 chr17:16945606-16945615 chr17:16945701-16945710 chr17:16945610-16945631 chr17:16945605-16945614 chr17:16945604-16945616 chr17:16945604-16945616
8	FOS	chr17:16945468-16945809	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr17:16944366-16945696	U87	brain:	n/a	n/a
10	POLR2A	chr17:16945346-16945996	HUVEC	blood vessel:	n/a	n/a
11	PAX5	chr17:16945378-16945733	GM12878	blood:	n/a	n/a
12	NFYB	chr17:16945012-16945803	Hela-S3	cervix:	n/a	chr17:16945619-16945634 chr17:16945661-16945675 chr17:16945660-16945675 chr17:16945621-16945633 chr17:16945660-16945675
13	TCF7L2	chr17:16945279-16945736	MCF-7	breast:	n/a	n/a
14	MAX	chr17:16945036-16946121	HepG2	liver:	n/a	n/a
15	RAD21	chr17:16945314-16945751	ECC-1	luminal epithelium:	n/a	n/a
16	SP1	chr17:16944243-16945770	A549	lung:	n/a	chr17:16945700-16945712 chr17:16945702-16945711 chr17:16945459-16945473 chr17:16945700-16945712 chr17:16945701-16945710 chr17:16944956-16944970 chr17:16945606-16945615 chr17:16945701-16945710 chr17:16945610-16945631 chr17:16945605-16945614 chr17:16945604-16945616 chr17:16945604-16945616
17	POLR2A	chr17:16945288-16946227	MCF-7	breast:	n/a	n/a
18	MXI1	chr17:16944242-16948097	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr17:16944949-16945729	H1-neurons	neurons:	n/a	n/a
20	YY1	chr17:16945449-16945645	K562	blood:	n/a	chr17:16945549-16945563
21	TBL1XR1	chr17:16945521-16945568	K562	blood:	n/a	n/a
22	FOSL2	chr17:16944231-16945608	A549	lung:	n/a	chr17:16945166-16945176 chr17:16945166-16945176
23	MAX	chr17:16945118-16945872	MCF-7	breast:	n/a	n/a
24	POLR2A	chr17:16944360-16945696	U87	brain:	n/a	n/a
25	ELF1	chr17:16945255-16945862	GM12878	blood:	n/a	chr17:16945483-16945495 chr17:16945508-16945520
26	MAX	chr17:16945379-16945658	HepG2	liver:	n/a	n/a
27	MXI1	chr17:16944131-16947555	IMR90	lung:	n/a	n/a
28	HCFC1	chr17:16944815-16945951	Hela-S3	cervix:	n/a	n/a
29	IRF1	chr17:16945401-16945834	K562	blood:	n/a	chr17:16945602-16945616 chr17:16945698-16945712
30	YY1	chr17:16945427-16945690	HCT-116	colon:	n/a	chr17:16945670-16945684 chr17:16945549-16945563
31	RCOR1	chr17:16944942-16945734	IMR90	lung:	n/a	n/a
32	SP2	chr17:16945378-16945719	H1-hESC	embryonic stem cell:	n/a	chr17:16945604-16945619 chr17:16945662-16945672 chr17:16945666-16945689 chr17:16945619-16945629
33	NRF1	chr17:16945486-16945686	GM12878	blood:	n/a	n/a
34	E2F6	chr17:16945256-16946203	K562	blood:	n/a	chr17:16945647-16945661 chr17:16945946-16945957 chr17:16945402-16945414 chr17:16945549-16945559 chr17:16945401-16945416
35	POLR2A	chr17:16945396-16946019	GM15510	blood:	n/a	n/a
36	PBX3	chr17:16945247-16945915	A549	lung:	n/a	chr17:16945663-16945672 chr17:16945667-16945687
37	MAX	chr17:16945024-16945898	HepG2	liver:	n/a	n/a
38	ZKSCAN1	chr17:16945122-16945715	Hela-S3	cervix:	n/a	n/a
39	GABPA	chr17:16945443-16945710	K562	blood:	n/a	n/a
40	CREB1	chr17:16945326-16945734	H1-hESC	embryonic stem cell:	n/a	n/a
41	EP300	chr17:16945270-16945659	K562	blood:	n/a	chr17:16945551-16945560
42	FOS	chr17:16945446-16945823	K562	blood:	n/a	n/a
43	RUNX3	chr17:16945005-16945738	GM12878	blood:	n/a	n/a
44	CREB1	chr17:16945365-16945771	GM12878	blood:	n/a	n/a
45	MXI1	chr17:16944456-16945709	H1-hESC	embryonic stem cell:	n/a	n/a
46	MAX	chr17:16945251-16945753	H1-hESC	embryonic stem cell:	n/a	n/a
47	RCOR1	chr17:16945054-16945641	Hela-S3	cervix:	n/a	n/a
48	MXI1	chr17:16944369-16945837	HepG2	liver:	n/a	n/a
49	MXI1	chr17:16944558-16945715	Hela-S3	cervix:	n/a	n/a
50	PBX3	chr17:16945256-16945833	A549	lung:	n/a	chr17:16945663-16945672 chr17:16945667-16945687

No.	Distal block	Cell Line	Cell type
1	chr17:16943176..16945630-chr17:17102978..17105800,2	K562	blood:
2	chr17:16944536..16947207-chr17:17109103..17111480,2	MCF-7	breast:
3	chr17:16944416..16947050-chr17:16979219..16983384,3	MCF-7	breast:
4	chr17:16944952..16946961-chr17:17072835..17074607,2	K562	blood:
5	chr17:16917707..16920531-chr17:16944662..16947361,2	MCF-7	breast:

Variant related genes	Relation type
MPRIP	TF binding region
ENSG00000225442	Chromatin interaction
ENSG00000260328	Chromatin interaction
ENSG00000133030	Chromatin interaction
ENSG00000179598	Chromatin interaction
ENSG00000206859	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3355439	chr17:16944752-16947600	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3341315	chr17:16945077-16947125	Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16944400-16945600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr17:16944400-16945600	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr17:16944600-16945600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr17:16944800-16945600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr17:16944800-16945600	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr17:16944800-16945600	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr17:16944800-16945600	Flanking Active TSS	GM12878-XiMat	blood
8	chr17:16945000-16945600	Active TSS	Primary T cells from cord blood	blood
9	chr17:16945000-16945600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:16945000-16945600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr17:16945000-16945600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
12	chr17:16945000-16945600	Flanking Active TSS	Fetal Muscle Trunk	muscle
13	chr17:16945000-16945600	Flanking Active TSS	Fetal Muscle Leg	muscle
14	chr17:16945000-16945600	Flanking Active TSS	HMEC	breast
15	chr17:16945000-16945600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr17:16945000-16947000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr17:16945000-16947200	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr17:16945000-16948200	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr17:16945200-16945600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr17:16945200-16945600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr17:16945200-16945600	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr17:16945200-16945600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr17:16945200-16945600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:16945200-16945600	Flanking Active TSS	Placenta	Placenta
25	chr17:16945200-16945600	Flanking Active TSS	Fetal Thymus	thymus
26	chr17:16945200-16945600	Flanking Active TSS	Placenta Amnion	Placenta Amnion
27	chr17:16945200-16946800	Active TSS	Ovary	ovary
28	chr17:16945200-16947000	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr17:16945200-16947000	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr17:16945200-16947000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr17:16945200-16947000	Active TSS	Brain Anterior Caudate	brain
32	chr17:16945200-16947000	Active TSS	Fetal Brain Female	brain
33	chr17:16945200-16947000	Active TSS	Psoas Muscle	Psoas
34	chr17:16945200-16947000	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr17:16945200-16947000	Active TSS	Small Intestine	intestine
36	chr17:16945200-16947200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr17:16945200-16947200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr17:16945200-16947200	Active TSS	Rectal Smooth Muscle	rectum
39	chr17:16945200-16947400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr17:16945200-16947400	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr17:16945200-16947400	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr17:16945200-16947600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr17:16945200-16947600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr17:16945200-16947600	Active TSS	Fetal Kidney	kidney
45	chr17:16945200-16947600	Active TSS	Gastric	stomach
46	chr17:16945200-16947600	Active TSS	Pancreas	Pancrea
47	chr17:16945200-16947800	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr17:16945200-16948400	Active TSS	Aorta	Aorta
49	chr17:16945200-16948400	Active TSS	Esophagus	oesophagus
50	chr17:16945400-16945600	Active TSS	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links