Variant report

Variant	rs371000275
Chromosome Location	chr11:10758186-10758187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10645775..10647638-chr11:10757654..10759171,2	K562	blood:
2	chr11:10756194..10759055-chr11:10771623..10774261,2	K562	blood:
3	chr11:10678917..10680760-chr11:10757378..10759987,2	K562	blood:
4	chr11:10726070..10727726-chr11:10756782..10759046,2	K562	blood:
5	chr11:10756121..10759478-chr11:10761013..10764437,4	K562	blood:
6	chr11:10429637..10431690-chr11:10756328..10758513,2	MCF-7	breast:
7	chr11:10756589..10759055-chr11:10771202..10773123,2	K562	blood:
8	chr11:10755622..10759318-chr11:10762937..10767532,4	K562	blood:
9	chr11:10756270..10758622-chr11:10829204..10831091,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction
ENSG00000198730	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000246308	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv38696	chr11:10757081-10762532	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10754200-10759600	Weak transcription	Right Atrium	heart
2	chr11:10756200-10758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:10756200-10758200	Enhancers	Esophagus	oesophagus
4	chr11:10756200-10758200	Enhancers	Ovary	ovary
5	chr11:10756600-10772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:10756800-10758200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:10756800-10758200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:10757000-10758200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:10757000-10758200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:10757000-10758200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:10757000-10758200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:10757000-10758200	Enhancers	Fetal Intestine Large	intestine
13	chr11:10757000-10758200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:10757000-10758200	Flanking Active TSS	Hela-S3	cervix
15	chr11:10757000-10758200	Enhancers	HSMMtube	muscle
16	chr11:10757000-10758200	Flanking Active TSS	NHEK	skin
17	chr11:10757000-10758200	Flanking Active TSS	Osteobl	bone
18	chr11:10757200-10758200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:10757200-10758200	Flanking Active TSS	Stomach Mucosa	stomach
20	chr11:10757200-10758200	Flanking Active TSS	HMEC	breast
21	chr11:10757400-10758200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:10757400-10758200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr11:10757400-10758200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:10757400-10758200	Enhancers	K562	blood
25	chr11:10757400-10758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:10757400-10763600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:10757600-10758200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:10757600-10758200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr11:10757600-10758200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr11:10757600-10758200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr11:10757600-10758200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:10757600-10758200	Enhancers	Colonic Mucosa	Colon
33	chr11:10757600-10758200	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr11:10757600-10758200	Flanking Active TSS	A549	lung
35	chr11:10757600-10758200	Flanking Active TSS	HSMM	muscle
36	chr11:10757600-10758200	Flanking Active TSS	NH-A	brain
37	chr11:10757600-10758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:10757600-10762600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:10757800-10758200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:10757800-10758200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:10757800-10758200	Enhancers	Aorta	Aorta
42	chr11:10757800-10758200	Enhancers	Rectal Smooth Muscle	rectum
43	chr11:10757800-10758400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:10757800-10759600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:10757800-10762400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:10757800-10763400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:10757800-10763400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:10757800-10764000	Weak transcription	Liver	Liver
49	chr11:10758000-10758200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:10758000-10758200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links