Variant report

Variant	rs371009976
Chromosome Location	chr9:136649397-136649398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136644899..136652439-chr9:136855339..136859914,10	MCF-7	breast:
2	chr9:136642803..136649542-chr9:136652545..136658247,6	MCF-7	breast:
3	chr9:136645262..136664386-chr9:136851810..136861142,57	MCF-7	breast:
4	chr2:54196664..54197534-chr9:136649238..136649738,2	Hela-S3	cervix:
5	chr9:136649018..136654096-chr9:136736895..136740406,5	MCF-7	breast:
6	chr9:136649149..136651689-chr9:136653556..136656120,3	K562	blood:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv466622	chr9:136617292-136658816	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv615691	chr9:136617292-136658816	Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv894118	chr9:136624542-136678954	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv894119	chr9:136629399-136657960	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv894120	chr9:136629399-136662638	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv894121	chr9:136629399-136692787	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	esv3424363	chr9:136649131-136653429	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136624800-136657800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:136633200-136653400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:136633200-136653600	Weak transcription	Brain Angular Gyrus	brain
4	chr9:136636600-136652200	Strong transcription	HepG2	liver
5	chr9:136636800-136653800	Strong transcription	NHEK	skin
6	chr9:136637400-136653600	Strong transcription	Liver	Liver
7	chr9:136637800-136653200	Weak transcription	Small Intestine	intestine
8	chr9:136639200-136653000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:136639400-136651000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:136639400-136653000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:136640000-136651000	Weak transcription	Primary T cells from cord blood	blood
12	chr9:136640000-136651600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr9:136640000-136652600	Weak transcription	Stomach Mucosa	stomach
14	chr9:136640000-136658000	Weak transcription	Fetal Thymus	thymus
15	chr9:136640000-136679400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:136640200-136652400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:136640200-136653000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:136640200-136658000	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:136640200-136659400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:136640400-136650400	Strong transcription	Fetal Muscle Leg	muscle
21	chr9:136640400-136650600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:136640400-136651200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:136640400-136652200	Strong transcription	Fetal Intestine Large	intestine
24	chr9:136640400-136652600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr9:136640400-136653000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:136640400-136682600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr9:136640800-136650800	Weak transcription	Fetal Kidney	kidney
28	chr9:136640800-136652200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:136640800-136667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:136641200-136651400	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:136641200-136652400	Strong transcription	Fetal Intestine Small	intestine
32	chr9:136641400-136651600	Strong transcription	Fetal Brain Female	brain
33	chr9:136641600-136649600	Weak transcription	NH-A	brain
34	chr9:136641600-136654200	Weak transcription	Right Ventricle	heart
35	chr9:136642000-136651200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:136642200-136651000	Weak transcription	A549	lung
37	chr9:136642800-136651000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:136643000-136651000	Weak transcription	Brain Substantia Nigra	brain
39	chr9:136643000-136658000	Weak transcription	Left Ventricle	heart
40	chr9:136643200-136689800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:136643400-136650800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr9:136643400-136653000	Weak transcription	HUVEC	blood vessel
43	chr9:136643600-136650600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr9:136643800-136672600	Weak transcription	Aorta	Aorta
45	chr9:136644000-136650600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:136644000-136651200	Weak transcription	Colonic Mucosa	Colon
47	chr9:136644000-136651200	Weak transcription	Esophagus	oesophagus
48	chr9:136644600-136654600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:136644800-136650200	Weak transcription	Ovary	ovary
50	chr9:136644800-136650400	Weak transcription	H1 Cell Line	embryonic stem cell

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