Variant report

Variant	rs371020410
Chromosome Location	chr12:56268297-56268298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
OLA1P3	TF binding region
RNU1-69P	TF binding region
ENSG00000182796	Chromatin interaction
ENSG00000205323	Chromatin interaction
ENSG00000123353	Chromatin interaction
ENSG00000135392	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv719	chr12:56246405-56290812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1051961	chr12:56262220-56629427	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	284 gene(s)	inside rSNPs	diseases
3	esv3347258	chr12:56267734-56298106	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56267400-56269000	Weak transcription	Fetal Thymus	thymus
2	chr12:56267800-56268400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:56267800-56268400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:56267800-56268600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:56267800-56268600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:56267800-56268600	Enhancers	Brain Cingulate Gyrus	brain
7	chr12:56267800-56268800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:56268000-56268600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:56268000-56268600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:56268000-56270200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:56268000-56270200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:56268200-56268400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:56268200-56269200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:56268200-56269200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr12:56268200-56269800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:56268200-56270200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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