Variant report

Variant	rs371050124
Chromosome Location	chr1:212606994-212606995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:212541839..212544001-chr1:212606359..212607860,2	MCF-7	breast:
2	chr1:212587912..212590110-chr1:212604889..212609190,4	K562	blood:
3	chr1:212606631..212609505-chr1:212609658..212612237,5	K562	blood:
4	chr1:212585974..212594847-chr1:212598812..212609579,19	K562	blood:
5	chr1:212606338..212608364-chr1:212730714..212733205,2	K562	blood:
6	chr1:212606882..212608476-chr1:212631103..212632696,2	MCF-7	breast:
7	chr1:212604504..212608752-chr1:212780786..212783858,6	K562	blood:
8	chr1:212586060..212592297-chr1:212603893..212609565,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000065600	Chromatin interaction
ENSG00000162772	Chromatin interaction
ENSG00000260805	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	nsv873156	chr1:212585092-212646225	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv3389348	chr1:212605479-212607477	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212605600-212607000	Active TSS	Brain Hippocampus Middle	brain
2	chr1:212605600-212607000	Active TSS	Left Ventricle	heart
3	chr1:212605600-212607000	Active TSS	Ovary	ovary
4	chr1:212605600-212607000	Active TSS	Rectal Smooth Muscle	rectum
5	chr1:212605600-212607200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr1:212605600-212607200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:212605600-212607200	Active TSS	A549	lung
8	chr1:212605600-212607600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:212605600-212607600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr1:212605800-212607000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:212605800-212607000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:212605800-212607000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:212605800-212607000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:212605800-212607000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:212605800-212607000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:212605800-212607000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:212605800-212607000	Active TSS	Psoas Muscle	Psoas
18	chr1:212605800-212607000	Active TSS	Right Atrium	heart
19	chr1:212605800-212607000	Active TSS	Right Ventricle	heart
20	chr1:212605800-212607000	Active TSS	HSMMtube	muscle
21	chr1:212605800-212607200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:212605800-212607200	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr1:212605800-212607200	Active TSS	NHDF-Ad	bronchial
24	chr1:212605800-212607200	Active TSS	NHLF	lung
25	chr1:212605800-212607400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr1:212605800-212607400	Active TSS	Aorta	Aorta
27	chr1:212605800-212607400	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr1:212605800-212607400	Active TSS	Fetal Kidney	kidney
29	chr1:212605800-212607600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:212606000-212607000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:212606000-212607000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr1:212606000-212607000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:212606000-212607000	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr1:212606000-212607000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:212606000-212607000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:212606000-212607000	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr1:212606000-212607000	Active TSS	Esophagus	oesophagus
38	chr1:212606000-212607000	Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr1:212606000-212607000	Active TSS	Stomach Smooth Muscle	stomach
40	chr1:212606000-212607000	Active TSS	GM12878-XiMat	blood
41	chr1:212606000-212607000	Active TSS	HepG2	liver
42	chr1:212606000-212607200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr1:212606000-212607200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr1:212606000-212607200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:212606000-212607200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:212606000-212607200	Active TSS	Brain Angular Gyrus	brain
47	chr1:212606000-212607200	Active TSS	Brain Anterior Caudate	brain
48	chr1:212606000-212607200	Active TSS	Brain Cingulate Gyrus	brain
49	chr1:212606000-212607200	Active TSS	Brain Substantia Nigra	brain
50	chr1:212606000-212607200	Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links