Variant report

Variant	rs371092045
Chromosome Location	chr6:144385001-144385002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
2	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
3	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
4	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
5	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:

Variant related genes	Relation type
ENSG00000235740	Chromatin interaction
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358461	chr6:144384284-144386832	Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:144383800-144385200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr6:144384200-144385200	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr6:144384200-144385200	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr6:144384200-144385200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr6:144384200-144386000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:144384200-144386000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:144384200-144386200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr6:144384200-144386200	Active TSS	Rectal Smooth Muscle	rectum
10	chr6:144384200-144386200	Bivalent/Poised TSS	NHDF-Ad	bronchial
11	chr6:144384400-144385200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:144384400-144385600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:144384400-144386000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
14	chr6:144384400-144386200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:144384400-144386200	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:144384400-144386400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:144384600-144385200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
18	chr6:144384600-144385200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:144384600-144385200	Bivalent/Poised TSS	Fetal Heart	heart
20	chr6:144384600-144385200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr6:144384600-144385200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
22	chr6:144384600-144385200	Flanking Bivalent TSS/Enh	HMEC	breast
23	chr6:144384600-144385200	Flanking Bivalent TSS/Enh	NH-A	brain
24	chr6:144384600-144385800	Flanking Bivalent TSS/Enh	Dnd41	blood
25	chr6:144384600-144386000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:144384600-144386000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:144384600-144386000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr6:144384600-144386000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:144384600-144386000	Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr6:144384600-144386000	Active TSS	Brain Substantia Nigra	brain
31	chr6:144384600-144386000	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr6:144384600-144386200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:144384600-144386200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:144384600-144386200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:144384600-144386200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
36	chr6:144384600-144386200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:144384600-144386200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:144384600-144386200	Active TSS	Left Ventricle	heart
39	chr6:144384600-144386200	Active TSS	Ovary	ovary
40	chr6:144384600-144386200	Active TSS	Right Ventricle	heart
41	chr6:144384600-144386200	Active TSS	Small Intestine	intestine
42	chr6:144384600-144386200	Bivalent/Poised TSS	Stomach Mucosa	stomach
43	chr6:144384600-144386200	Bivalent/Poised TSS	A549	lung
44	chr6:144384600-144386200	Bivalent/Poised TSS	HSMM	muscle
45	chr6:144384600-144386400	Active TSS	Aorta	Aorta
46	chr6:144384600-144386400	Active TSS	Colonic Mucosa	Colon
47	chr6:144384600-144386600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:144384600-144386800	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr6:144384800-144385200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:144384800-144385200	Flanking Active TSS	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links