Variant report

Variant	rs371123592
Chromosome Location	chr6:36807157-36807158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36803997..36809047-chr6:36852852..36856509,4	K562	blood:
2	chr6:36804882..36807604-chr6:36813482..36815194,2	MCF-7	breast:
3	chr6:36804125..36807562-chr6:36952553..36955386,3	K562	blood:
4	chr6:36807086..36809328-chr6:36841078..36843476,3	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000137168	Chromatin interaction
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3421891	chr6:36806599-36809147	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36804000-36808200	Active TSS	Brain Anterior Caudate	brain
2	chr6:36805200-36807200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr6:36806000-36808000	Active TSS	Left Ventricle	heart
4	chr6:36806200-36808200	Active TSS	Brain Angular Gyrus	brain
5	chr6:36806200-36808400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:36806400-36807400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
7	chr6:36806600-36807200	Bivalent Enhancer	Stomach Mucosa	stomach
8	chr6:36806600-36807400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr6:36806600-36807400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
10	chr6:36806600-36807600	Enhancers	Lung	lung
11	chr6:36806600-36808000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
12	chr6:36806600-36808200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:36806600-36808200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
14	chr6:36806600-36808400	Bivalent/Poised TSS	Fetal Kidney	kidney
15	chr6:36806600-36809000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:36806600-36809000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr6:36806600-36809000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:36806600-36809000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:36806600-36809000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:36806600-36809000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:36806800-36807200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:36806800-36807200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr6:36806800-36807200	Bivalent Enhancer	Primary B cells from cord blood	blood
24	chr6:36806800-36807200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr6:36806800-36807200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr6:36806800-36807200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
27	chr6:36806800-36807200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
28	chr6:36806800-36807200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
29	chr6:36806800-36807200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:36806800-36807200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
31	chr6:36806800-36807200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
32	chr6:36806800-36807200	Bivalent Enhancer	Fetal Thymus	thymus
33	chr6:36806800-36807200	Enhancers	Pancreas	Pancrea
34	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:36806800-36807400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
38	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
40	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
41	chr6:36806800-36807400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
42	chr6:36806800-36807400	Flanking Bivalent TSS/Enh	HepG2	liver
43	chr6:36806800-36807600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:36806800-36807800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:36806800-36808000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:36806800-36808000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:36806800-36808400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:36806800-36808400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
49	chr6:36806800-36808400	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr6:36806800-36808600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links