Variant report

Variant	rs371139399
Chromosome Location	chr6:26520153-26520154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:26520076-26520252	MCF10A-Er-Src	breast:	n/a	n/a
2	SREBP2	chr6:26520144-26522402	GM12878	blood:	n/a	n/a

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26297237..26299588-chr6:26519952..26522018,2	K562	blood:
2	chr6:26383299..26384986-chr6:26520070..26522600,2	K562	blood:
3	chr6:26420252..26422779-chr6:26519711..26522673,2	K562	blood:
4	chr6:26229652..26232354-chr6:26520028..26522000,2	K562	blood:
5	chr6:26517743..26520869-chr6:26521157..26524450,4	MCF-7	breast:
6	chr6:26157128..26159753-chr6:26519202..26521718,3	K562	blood:
7	chr6:26195075..26199998-chr6:26518402..26523264,7	K562	blood:
8	chr6:26518768..26523261-chr6:26527138..26531427,8	MCF-7	breast:
9	chr6:26122811..26125684-chr6:26519933..26522732,4	K562	blood:
10	chr6:26321606..26324992-chr6:26518176..26520933,3	K562	blood:
11	chr6:26352176..26356420-chr6:26519489..26524545,4	K562	blood:
12	chr6:26248591..26251636-chr6:26519454..26522320,3	K562	blood:
13	chr6:26519250..26523737-chr6:27099178..27105777,8	K562	blood:
14	chr6:26457960..26461047-chr6:26519488..26522400,3	MCF-7	breast:
15	chr6:26420245..26422646-chr6:26519763..26522632,2	K562	blood:
16	chr6:26215412..26219085-chr6:26518224..26524021,6	K562	blood:
17	chr6:26122246..26124996-chr6:26519353..26522732,3	K562	blood:
18	chr6:26187760..26190799-chr6:26518890..26523308,5	K562	blood:
19	chr1:228783557..228784071-chr6:26519913..26520856,2	Hela-S3	cervix:
20	chr6:26364672..26366648-chr6:26519902..26522691,2	K562	blood:
21	chr6:26284286..26286997-chr6:26519588..26522057,2	K562	blood:
22	chr6:26283829..26285786-chr6:26519588..26522507,3	K562	blood:

No data

Variant related genes	Relation type
RNU6-502P	TF binding region
HCG11	TF binding region
ENSG00000197846	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000220875	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000186470	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000261353	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000112763	Chromatin interaction
ENSG00000215979	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000124549	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000124508	Chromatin interaction
ENSG00000252399	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000212237	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000124635	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	esv3421845	chr6:26519998-26522546	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26505600-26520600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:26514200-26520400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:26515600-26520400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:26516000-26520400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:26516000-26520400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:26516200-26520600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:26517200-26520600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:26517800-26520400	Weak transcription	A549	lung
9	chr6:26518200-26520200	Weak transcription	HepG2	liver
10	chr6:26519000-26520400	Enhancers	K562	blood
11	chr6:26519000-26520600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:26519200-26520200	Weak transcription	GM12878-XiMat	blood
13	chr6:26519800-26520400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:26520000-26520600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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