Variant report

Variant	rs371230924
Chromosome Location	chr10:98048300-98048301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98042724..98044710-chr10:98045849..98048382,2	K562	blood:
2	chr10:97889408..97891756-chr10:98048251..98051356,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98045600-98049800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:98045600-98052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:98045600-98053000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:98046200-98048400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:98046400-98048600	Enhancers	Dnd41	blood
6	chr10:98046600-98050800	Enhancers	Fetal Thymus	thymus
7	chr10:98046800-98049400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:98047000-98048400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:98047000-98048400	Enhancers	HMEC	breast
10	chr10:98047000-98048600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:98047000-98050400	Enhancers	Placenta	Placenta
12	chr10:98047200-98048400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:98047200-98048400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:98047200-98048600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:98047200-98048600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr10:98047200-98048600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:98047200-98048800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:98047400-98048400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr10:98047400-98048600	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr10:98047400-98048600	Active TSS	GM12878-XiMat	blood
21	chr10:98047600-98048400	Active TSS	Fetal Intestine Large	intestine
22	chr10:98047600-98048800	Enhancers	Duodenum Mucosa	Duodenum
23	chr10:98047800-98048400	Flanking Active TSS	Liver	Liver
24	chr10:98047800-98048400	Active TSS	HepG2	liver
25	chr10:98048000-98048400	Active TSS	Primary B cells from cord blood	blood
26	chr10:98048000-98048400	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr10:98048000-98048400	Flanking Active TSS	Fetal Intestine Small	intestine
28	chr10:98048200-98048400	Enhancers	Primary T cells from cord blood	blood
29	chr10:98048200-98048400	Enhancers	Fetal Kidney	kidney
30	chr10:98048200-98048400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr10:98048200-98048400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr10:98048200-98048400	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr10:98048200-98048400	Active TSS	Rectal Smooth Muscle	rectum
34	chr10:98048200-98048600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:98048200-98049000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:98048200-98050200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:98048200-98050200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:98048200-98050400	Enhancers	Thymus	Thymus
39	chr10:98048200-98052800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:98048200-98053000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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