Variant report

Variant	rs371272368
Chromosome Location	chr5:75671887-75671888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75670460..75672196-chr5:75679866..75681597,2	MCF-7	breast:
2	chr5:75669499..75672050-chr5:75695299..75697873,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv980686	chr5:75671882-75674932	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75668600-75676600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:75668800-75676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:75669000-75672000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:75669000-75672200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:75669000-75672600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:75669000-75672800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:75669000-75676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:75669000-75676400	Weak transcription	Placenta	Placenta
9	chr5:75669000-75676800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:75669000-75682400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:75669200-75672200	Weak transcription	A549	lung
12	chr5:75669200-75672600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:75669800-75672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:75670800-75672400	Enhancers	Primary hematopoietic stem cells	blood
15	chr5:75670800-75672400	Enhancers	HepG2	liver
16	chr5:75670800-75673200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:75671400-75673000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:75671400-75673000	Enhancers	K562	blood
19	chr5:75671600-75673000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:75671800-75672600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links